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Fix processing of TestDataSet-10 #1030

@jan-petr

Description

@jan-petr

Description

  • Philips_3DGRASE_FLAIR_M0_2ndRun_HiQ - M0PositionInASL4D was in ASL4D.json despite it should have been removed after ASL/M0 split. Fix this in the dataset.
  • Philips_2DEPI_Lesion_NoFLAIR_NoM0_HiQ - ASLT1w registration was incorrect in 1.8.0, but is now fixed :D Probably by fixing during 1.9.0 development :)
  • Philips_3DGRASE_MultiSessions_T1wAlreadyDone_LoQ - there's a drop of contrast in rM0.nii in the frontal lobe.
  • Siemens_2DEPI_noBsup_FLAIR_LoQ - investigating...
  • Siemens3DGRASE_Structural_AlreadyDone_HiQ - difference in rM0.nii, but the 1.9.0 version actually looks better

Line 85 in xASL_im_M0ErodeSmoothExtrapolate.m the fixed value 0.6 used to be 0.7 creating now differences between 1.8 and 1.9

Also check Flavors processing of the following flavors:

  • Siemens_PCASL_3DGRASE_VD13D_2
  • GE_PCASL_3Dspiral_25.0LX_ADNI3_027_S_5079_1
  • Philips_PASL_2DEPI_5.4.0.2-LookLocker_1
  • Philips_PCASL_2DEPI_PARREC_2
  • Philips_PCASL_3DGRASE_5.1.7.2_1
  • Siemens_PASL_3DGRASE_E11_1
  • Siemens_PASL_3DGRASE_VE11C_2
  • Siemens_PCASL_3DGRASE_VB17A_multiPLD_1
  • Missing file catreport_.*.pdf in derivatives... for Siemens_PASL_3DGRASE_E11_1
  • Siemens_PCASL_3DGRASE_VD13A_Hadamard8FME_1

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