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Low speed with 5k genes #97
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Unfortunately, the training speed is lower than expected in the case we have ~5k genes. In my case, it tooks almost 1.5h per hour.
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andrewmoorman commentedon Apr 1, 2025
@mossishahi thanks for letting us know! Is this supposed to be "1.5 hours per epoch" (which would be very slow), or "1.5 hours per training run" (which would be normal)?
mossishahi commentedon Apr 1, 2025
@andrewmoorman thanks for your response. it's 1.5 hour per epoch
christophechu commentedon May 22, 2025
Using L40 GPU, per epoch costs around 20 mins
mossishahi commentedon May 25, 2025
@christophechu with 5k genes?
christophechu commentedon May 25, 2025
@mossishahi Yes. I think it depends on how many transcripts you detected, not how many gene.