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adding microbial oxygen metabolism terms#133

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diatomsRcool merged 2 commits intomasterfrom
microbe
Feb 10, 2021
Merged

adding microbial oxygen metabolism terms#133
diatomsRcool merged 2 commits intomasterfrom
microbe

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@diatomsRcool
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Adding
obligate aerobe
obligate anaerobe
facultative anaerobe
microaerophile

@diatomsRcool
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Putting on my biologist hat - It's not just that obligate anaerobes do fine without oxygen, it's that oxygen is bad for them. I was trying to reflect that. Maybe "an anaerobe that cannot grow in normal concentrations of oxygen"

Using "an anaerobe" instead of "an organism" was, I thought, the proper way to write an ontology definition, i.e., using the immediate parent class in the definition. Is that not the case?

What is the definition of microaerophile you want to use? "an anaerobe that can tolerate low levels of oxygen" I'm not sure i see the difference.

Do you want to add "aerotolerant" to the ontology?

@diatomsRcool diatomsRcool merged commit d0b23e5 into master Feb 10, 2021
@diatomsRcool diatomsRcool deleted the microbe branch February 10, 2021 15:21
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