Activity

1. sreehari-malapati-myprod

   added

   bugSomething isn't workingSomething isn't working

   on Aug 15, 2026
2. github-actions

   added

   parsing/qualityGraph extraction bugs, false positives, missing edgesGraph extraction bugs, false positives, missing edges

   stability/performanceServer crashes, OOM, hangs, high CPU/memoryServer crashes, OOM, hangs, high CPU/memory

   windowsWindows-specific issuesWindows-specific issues

   on Aug 15, 2026
3. DeusData commented on Aug 15, 2026

   

   DeusData

   on Aug 15, 2026

   Owner

   More actions

   Thank you for this — the version comparison, the progress counter, the allocator output and the exact command make it far more actionable than most crash reports, and I'm sorry it is broken for you.

   Taking the severity at face value: a tree that indexed in ~13 minutes on v0.9.0 reaching 1.2% in 45 minutes before dying is not only a memory problem. Two things are wrong there, and the slowdown may well be the cause rather than a side effect — something accumulating per extraction unit would explain both the pace and the allocator failures.

   One detail stands out. The failing allocations are small:

   mimalloc: error: unable to allocate memory (10240 bytes)
   mimalloc: error: unable to allocate memory (97201 bytes)
   

   A 10 KB allocation failing on a 376 GB host means the process hit a ceiling, not the machine. That points at one of: an RLIMIT_AS/RLIMIT_DATA limit on the account, a cgroup memory limit (very common if this runs in a container or under a systemd slice), or our own budget accounting — we chose budget_mb=192775 from a RAM fraction, and if that budget is being enforced while something over-retains, we would abort exactly like this.

   The most useful next step is the worker log, and here I have some luck to offer: the log named in your output (.worker-log-WIeGC4) was very likely 0 bytes — a crashed worker's log did not survive the crash, which is the single most-reported diagnostic dead end we have (#1145, #1130, #1450 and others). That is fixed in v0.10.5, which is being released today: the log survives the crash and names its run. Re-running on v0.10.5 should give you a log with the actual failure in it, which is the fact none of us has yet.

   If you are able, these would help a great deal:

   1. cat /data/codebase/.cache/codebase-memory-mcp/logs/.worker-log-WIeGC4 — even if it is empty, please say so; that is itself information.
   2. ulimit -a as the user running the index, and cat /sys/fs/cgroup/memory.max (or /sys/fs/cgroup/memory/memory.limit_in_bytes on cgroup v1). If either shows a ceiling far below 376 GB, that likely explains the small-allocation failures outright.
   3. Rough shape of the tree: du -sh /data/src/DEV_COMMON_BRANCH and the file count. 5,745,011 extraction units is large but not unprecedented, and knowing whether this is many small files or some very large ones matters for where to look.
   4. Whether this runs inside a container.

   I am not going to guess at a fix in this comment. What I can commit to is that a regression of this size between 0.9.0 and 0.10.4 is worth bisecting properly rather than patching at the symptom, and it goes to the top of the list after today's release.

   Thank you again — a clean "worked in version X, fails in version Y" with both numbers is the most valuable kind of report we get.
4. sreehari-malapati-myprod commented on Aug 15, 2026

   

   sreehari-malapati-myprod

   on Aug 15, 2026

   Author

   More actions

   ulimit -a

   real-time non-blocking time (microseconds, -R) unlimited
   core file size (blocks, -c) 0
   data seg size (kbytes, -d) unlimited
   scheduling priority (-e) 0
   file size (blocks, -f) unlimited
   pending signals (-i) 1541737
   max locked memory (kbytes, -l) 49350512
   max memory size (kbytes, -m) unlimited
   open files (-n) 1024
   pipe size (512 bytes, -p) 8
   POSIX message queues (bytes, -q) 819200
   real-time priority (-r) 0
   stack size (kbytes, -s) 8192
   cpu time (seconds, -t) unlimited
   max user processes (-u) 1541737
   virtual memory (kbytes, -v) unlimited
   file locks (-x) unlimited

   cat /sys/fs/cgroup/memory.max (or /sys/fs/cgroup/memory/memory.limit_in_bytes on cgroup v1)

   cat /sys/fs/cgroup/memory.max 2>/dev/null || cat /sys/fs/cgroup/memory/memory.limit_in_bytes 2>/dev/null || echo "no cgroup limit"
   no cgroup limit
   not defined.

   du -sh --exclude=.svn /data/src/DEV_COMMON_BRANCH
   16G /data/src/DEV_COMMON_BRANCH

   cat /data/src/DEV_COMMON_BRANCH/.cbmignore
   .svn/

   0.10.4

   time HOME=/data/codebase ./codebase-memory-mcp cli index_repository --repo-path /data/src/DEV_COMMON_BRANCH --mode full --name DEV_COMMON_BRANCH --persistence true
   Preparing one-shot local CBM command...
   level=warn msg=daemon.private_dir_group_writable_ancestor mode=0775
   level=warn msg=daemon.private_dir_group_writable_ancestor mode=0775
   level=info msg=mem.allocator.owned classes=all
   level=info msg=mem.init budget_mb=192775 total_ram_mb=385550 source=ram_fraction
   Running index_repository locally...
   index worker ended with crash (exit=-1, signal=11); inspect log: /data/codebase/.cache/codebase-memory-mcp/logs/.worker-log-yqio0b
   Failed index_repository (1270976 ms)

   real 21m13.549s
   user 0m3.615s
   sys 0m10.065s

   its crashed three times

   /.cache/codebase-memory-mcp/logs# ls -latr
   total 4256
   -rw------- 1 root root 1555481 Aug 15 03:24 .worker-log-BlAo6U
   -rw------- 1 root root 1429421 Aug 15 03:31 .worker-log-30HZz3
   drwx------ 3 root root 4096 Aug 15 03:31 ..
   -rw------- 1 root root 1351632 Aug 15 03:37 .worker-log-yqio0b
   drwx------ 2 root root 4096 Aug 15 03:38 .

   tail -f .worker-log-BlAo6U

   level=info msg=parallel.extract.progress done=107230 total=175637
   level=info msg=parallel.extract.progress done=107490 total=175637
   level=info msg=parallel.extract.progress done=107450 total=175637
   level=info msg=parallel.extract.file.done pos=106751 elapsed_ms=1092 defs=8 path=ifl_ifd_mcae.c
   level=info msg=parallel.extract.progress done=107510 total=175637
   level=info msg=parallel.extract.progress done=107430 total=175637
   level=info msg=parallel.extract.progress done=107320 total=175637
   mimalloc: error: thread 0x7F063DB266C0: unable to allocate memory (256 bytes)
   mimalloc: error: thread 0x7F063AB206C0: unable to allocate memory (160 bytes)
   mimalloc: error: thread 0x7F063AB206C0: out of memory in 'new'

   tail -f .worker-log-30HZz3

   level=info msg=parallel.extract.progress done=105880 total=175637
   level=info msg=parallel.extract.progress done=105660 total=175637
   level=info msg=parallel.extract.progress done=105940 total=175637
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   level=info msg=parallel.extract.progress done=106010 total=175637
   level=info msg=parallel.extract.progress done=105950 total=175637
   mimalloc: error: thread 0x7F6E67F326C0: unable to allocate memory (256 bytes)

   tail -f .worker-log-yqio0b

   level=info msg=parallel.extract.progress done=107070 total=175637
   level=info msg=parallel.extract.progress done=107130 total=175637
   level=info msg=parallel.extract.progress done=106960 total=175637
   level=info msg=parallel.extract.progress done=107090 total=175637
   level=info msg=parallel.extract.progress done=107140 total=175637
   mimalloc: error: thread 0x7F2BCE5A96C0: unable to allocate memory (524288 bytes)
   level=info msg=parallel.extract.progress done=106540 total=175637
   level=info msg=parallel.extract.progress done=107110 total=175637
   mimalloc: error: thread 0x7F2BC859D6C0: unable to allocate memory (524288 bytes)
   mimalloc: error: thread 0x7F2BD8DBE6C0: unable to allocate memory (320 bytes)

   uptime
   03:23:52 up 39 days, 22:26, 2 users, load average: 98.79, 83.04, 70.28

   with 0.9.0 on same host

   time HOME=/data/codebase ./codebase-memory-mcp cli index_repository --repo-path /data/src/DEV_COMMON_BRANCH --mode full --name DEV_COMMON_BRANCH --persistence true
   level=info msg=mem.init budget_mb=192775 total_ram_mb=385550
   level=info msg=index.supervisor.reap outcome=exit_nonzero exit_code=1 signal=0
   level=warn msg=index.supervisor.worker_failed outcome=exit_nonzero exit_code=1 log=/data/codebase/.cache/codebase-memory-mcp/logs/.worker-1152569.log
   level=info msg=index.supervisor.reap outcome=clean exit_code=0 signal=0

   {"project":"DEV_COMMON_BRANCH","excluded":{"dirs":["vendor" },"skipped_count":0,"nodes":5221264,"edges":17819147,"adr_present":false,"adr_hint":"Project indexed. Consider creating an Architecture Decision Record: explore the codebase with get_architecture(aspects=['all']), then use manage_adr(mode='update') to persist architectural insights across sessions.","artifact_present":false,"status":"indexed"}

   real 15m19.337s
   user 353m38.641s
   sys 21m38.106s

   max memory used:

              total        used        free      shared  buff/cache   available
   

   Mem: 376 296 15 0 64 75
   Swap: 0 0 0

   uptime
   04:05:20 up 39 days, 23:08, 2 users, load average: 15.67, 36.56, 38.25
5. DeusData commented on Aug 15, 2026

   

   DeusData

   on Aug 15, 2026

   Owner

   More actions

   This is exactly what was needed, thank you — and it disproves my hypothesis, which is useful.

   I was wrong about two things:

   1. No ceiling. virtual memory unlimited, max memory size unlimited, no cgroup limit. So the small failing allocations were not a policy ceiling — the process really did exhaust memory. That removes the easy explanation.
   2. Your worker logs are not empty. I predicted they would be 0 bytes and that v0.10.5's fix would be what gave you a diagnostic. They are 1.3–1.5 MB each. So the diagnostic has been there the whole time, and asking you to wait for a release to get it was wrong.

   The most useful thing now is the end of that log:

   tail -n 300 /data/codebase/.cache/codebase-memory-mcp/logs/.worker-log-yqio0b

   The last lines before the crash should name the file being processed and the phase, which is the one fact none of us has. If it contains anything you cannot share, the final ~50 lines with paths redacted still helps — the shape of the tail (repeating pass, one huge file, a specific extractor) is what matters.

   Two new facts from your run that change the picture:

   • The crash signal moved from 6 (abort, allocation failure) to 11 (segfault), and the run died at 21 minutes instead of 45. Three crashes, at least two different signatures. A segfault is not the same failure as running out of memory, and it may be the more informative one.
   • open files (-n) 1024. That is low for a machine with 96 CPUs, and the indexer scales workers with CPU count. It is not obviously the cause of an allocation failure, but a descriptor exhaustion under heavy parallelism can surface in confusing ways, so it is worth ruling out.

   Worth trying, as both a workaround and a diagnostic — cap the worker count:

   CBM_WORKERS=8 HOME=/data/codebase ./codebase-memory-mcp cli index_repository \
     --repo-path /data/src/DEV_COMMON_BRANCH --mode full --name DEV_COMMON_BRANCH --persistence true

   CBM_WORKERS is documented and overrides auto-detection. On a 96-CPU host the default fans out very wide, and each worker carries its own memory. If CBM_WORKERS=8 completes — even slowly — that tells us this is per-worker memory scaling rather than a single pathological file, and it gets you an index in the meantime. If it crashes at the same point regardless of worker count, that points at one specific input instead, and the log tail will name it.

   Also worth knowing: v0.9.0 indexed this in ~13 minutes, and your 0.10.4 run reached ~1% in 45 minutes. That slowdown may well be the cause rather than a symptom — something accumulating per extraction unit would produce both. That is the bisect I want to run between 0.9.0 and 0.10.4.

   v0.10.5 is publishing today. It does not fix this, and I am not going to suggest it will. It does make a crashed worker's log survive and name its run, which matters for the next person in your position — though as your ls shows, it was not your blocker.
6. sreehari-malapati-myprod commented on Aug 15, 2026

   

   sreehari-malapati-myprod

   on Aug 15, 2026

   Author

   More actions

   tail -n 300 .worker-log-kyYnEx
   level=info msg=parallel.extract.file.done pos=102084 elapsed_ms=1315 defs=14 path=ivykis.h
   level=info msg=parallel.extract.progress done=102700 total=175637
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   level=info msg=parallel.extract.file.done pos=102035 elapsed_ms=1444 defs=4 path=vector.h
   level=info msg=parallel.extract.progress done=102880 total=175637
   level=info msg=parallel.extract.progress done=102830 total=175637
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   level=info msg=parallel.extract.file.done pos=102744 elapsed_ms=1343 defs=2 path=_api.h
   level=info msg=parallel.extract.progress done=103580 total=175637
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   mimalloc: error: thread 0x7F09F3F4D6C0: unable to allocate memory (524288 bytes)
   mimalloc: error: thread 0x7F09DFF256C0: unable to allocate memory (256 bytes)
7. DeusData commented on Aug 15, 2026

   

   DeusData

   on Aug 15, 2026

   Owner

   More actions

   This is the most useful thing in the thread so far. Two observations, one of which I think is the actual lead.

   1. The log has no crash record — it just stops. 300 lines of routine progress and then nothing. That is consistent with the process being killed outright (segfault / SIGKILL) rather than failing an allocation and unwinding, and it matches the signal=11 run. So the abort-on-allocation case and the segfault case may not be the same bug.

   2. The lead: extraction is pathologically slow per file, on trivial files.

   parallel.extract.file.done pos=102084 elapsed_ms=1315 defs=14 path=ivykis.h
   parallel.extract.file.done pos=102035 elapsed_ms=1444 defs=4  path=vector.h
   

   1.3–1.4 seconds for a header yielding 4 and 14 definitions. That is orders of magnitude off. Whatever those milliseconds are being spent on, it is not parsing a small header — and it lines up with your original observation that v0.9.0 did the whole tree in ~13 minutes while 0.10.4 reached ~1% in 45.

   The shape I suspect is per-file work that scales with everything already extracted — a lookup or merge that walks the accumulated set for each new file. That single mechanism would explain all three symptoms at once: the quadratic slowdown, the memory growth, and a crash that arrives late rather than at a specific file.

   The one command that would confirm or kill that theory — sample the per-file time across the run:

   grep -o 'pos=[0-9]* elapsed_ms=[0-9]*' /data/codebase/.cache/codebase-memory-mcp/logs/.worker-log-kyYnEx \
     | awk 'NR%500==1' | head -40

   If elapsed_ms is small early and climbs steadily as pos grows, it is accumulation and the fix is a data-structure problem on our side. If it is uniformly ~1300 ms from the very first file, it is something constant about this tree — and that is a different, easier bug. Either answer is decisive, and it is one grep.

   Also, if it is easy: the same two lines from the earliest part of the log

   grep 'extract.file.done' .worker-log-kyYnEx | head -5

   One thing to clear up: this log reports total=175637, while your first report showed total=5745011. Is this a different run — a narrower path, or the CBM_WORKERS=8 attempt? I want to be sure I am reading the failing configuration and not a smaller one.

   For completeness: no crash line in the tail means the "worker log survives a crash" fix in v0.10.5 would not have added anything here — your logs were already being written. I said earlier it would help you; it would not have. The gap it closes is for people whose logs are genuinely empty, which is not your case.
8. sreehari-malapati-myprod commented on Aug 15, 2026

   

   sreehari-malapati-myprod

   on Aug 15, 2026

   Author

   More actions

   Yes these different runs the first with large repo is around 80GB which wrongly added some un-wanted directories in the repo....
   first run (80GB) - crashed

   level=info msg=parallel.extract.progress done=67030 total=5745011
   mimalloc: error: thread 0x7F52BE2BC6C0: unable to allocate memory (1048576 bytes)
   mimalloc: error: thread 0x7F52A1A636C0: unable to allocate memory (2097152 bytes)
   mimalloc: error: thread 0x7F52A7A7F6C0: unable to allocate memory (97201 bytes)
   mimalloc: error: thread 0x7F52B6AAD6C0: unable to allocate memory (10240 bytes)
   mimalloc: error: thread 0x7F529E25C6C0: out of memory in 'new'

   index worker ended with crash (exit=-1, signal=6); inspect log:
   /data/codebase/.cache/codebase-memory-mcp/logs/.worker-log-WIeGC4
   Failed index_repository (2724664 ms)

   real 45m27.116s
   user 0m4.666s
   sys 0m18.775s

   second run: (16GB) - crashed

   second run with small tail logs is cleared the un wanted data from repo and its reduced 16GB... (21 min with three tail logs)

   third run 16gb -> CBM_WORKERS =16 - crashed

   third run -> just pasted 300 lines from worker log and used CBM_WORKERS=16

   4th run 16gb -> CBM_WORKERS =8 - crashed -- still running but already one time crashed

   grep -o 'pos=[0-9]* elapsed_ms=[0-9]*' /data/codebase/.cache/codebase-memory-mcp/logs/.worker-log-DxCd2o | awk 'NR%500==1' | head -50
   pos=7 elapsed_ms=5004

   tail -n 3000 .worker-log-DxCd2o
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   mimalloc: error: thread 0x7F0ADFDCD6C0: unable to allocate memory (524288 bytes)
   mimalloc: error: thread 0x7F0ADF5CC6C0: unable to allocate memory (524288 bytes)
   mimalloc: error: thread 0x7F0ADCDC76C0: unable to allocate memory (10240 bytes)
   mimalloc: error: thread 0x7F0ADDDC96C0: unable to allocate memory (10240 bytes)
   mimalloc: error: thread 0x7F0ADF5CC6C0: unable to allocate memory (524288 bytes)
   mimalloc: error: thread 0x7F0ADC5C66C0: unable to allocate memory (10240 bytes)
   mimalloc: error: thread 0x7F0ADF5CC6C0: unable to allocate memory (524288 bytes)
   mimalloc: error: thread 0x7F0ADFDCD6C0: unable to allocate memory (10240 bytes)
   mimalloc: error: thread 0x7F0ADEDCB6C0: unable to allocate memory (524288 bytes)
   mimalloc: error: thread 0x7F0ADEDCB6C0: unable to allocate memory (524288 bytes)
   mimalloc: error: thread 0x7F0ADF5CC6C0: unable to allocate memory (10240 bytes)
   mimalloc: error: thread 0x7F0ADC5C66C0: unable to allocate memory (65536 bytes)
   mimalloc: error: thread 0x7F0ADD5C86C0: unable to allocate memory (10240 bytes)
   mimalloc: error: thread 0x7F0ADEDCB6C0: unable to allocate memory (524288 bytes)
   mimalloc: error: thread 0x7F0ADFDCD6C0: unable to allocate memory (10240 bytes)
   mimalloc: error: thread 0x7F0ADF5CC6C0: unable to allocate memory (65536 bytes)
   mimalloc: error: thread 0x7F0ADDDC96C0: unable to allocate memory (524288 bytes)
   mimalloc: error: thread 0x7F0ADCDC76C0: unable to allocate memory (10240 bytes)
   mimalloc: error: thread 0x7F0ADEDCB6C0: unable to allocate memory (524288 bytes)
   mimalloc: error: thread 0x7F0ADC5C66C0: unable to allocate memory (10240 bytes)
   mimalloc: error: thread 0x7F0ADDDC96C0: unable to allocate memory (524288 bytes)
   mimalloc: error: unable to allocate memory (65536 bytes)
   level=info msg=parallel.extract.progress done=106900 total=175637
   mimalloc: error: thread 0x7F0ADF5CC6C0: unable to allocate memory (10240 bytes)
   mimalloc: error: thread 0x7F0ADCDC76C0: unable to allocate memory (65536 bytes)
   mimalloc: error: thread 0x7F0ADEDCB6C0: unable to allocate memory (524288 bytes)
   mimalloc: error: thread 0x7F0ADDDC96C0: unable to allocate memory (524288 bytes)
   mimalloc: error: unable to allocate memory (10240 bytes)
   mimalloc: error: thread 0x7F0ADC5C66C0: unable to allocate memory (65536 bytes)
9. DeusData commented on Aug 15, 2026

   

   DeusData

   on Aug 15, 2026

   Owner

   More actions

   Thank you — and this makes me correct my own analysis in two places. Both corrections matter, so I want to be explicit rather than quietly move on.

   Correction 1: my "1.3 seconds per file is pathological" reading was selection bias. I have since checked how that line is emitted (src/pipeline/pass_parallel.c):

   static void log_extract_done(int pos, uint64_t ms, int defs, const char *path) {
       if (pos < PP_LOG_THRESH || ms > PP_TIMER_THRESH) {   /* 24, 1000 */

   parallel.extract.file.done is written only for the first 24 files, or for files that took more than 1 second. So every late-run sample I quoted was, by construction, a slow file. Those numbers could not have shown me anything else, and I drew a conclusion from them anyway.

   The useful consequence is the opposite of what I said: your awk 'NR%500==1' returning a single line means there are fewer than 500 such records in a log covering ~77,000 processed units. So the overwhelming majority of files are extracting in under a second. There is no uniform slowdown. Only a small minority are slow.

   Correction 2: the "13 minutes vs 45 minutes" comparison was not like-for-like — and I should have questioned it rather than building on it. Your first run was the 80 GB tree with unwanted directories included (total=5745011); the cleaned tree is 16 GB (total=175637), a ~33× smaller unit count. So the dramatic slowdown I was chasing may be largely an artefact of comparing different trees.

   Which leaves one question that actually decides this: when v0.9.0 indexed this repository in ~13 minutes, was that the cleaned 16 GB tree, or the same 80 GB one? If v0.9.0 did the 80 GB tree in 13 minutes, there is a severe regression. If it did the 16 GB tree, then the performance story mostly dissolves and what remains is purely the crash.

   On the crash — the real finding is that worker count does not matter. It died at default, at CBM_WORKERS=16, and at CBM_WORKERS=8. That rules out simple per-worker memory scaling, which was my leading theory. Combined with the log ending mid-progress with no error line, and signals of both 6 and 11, this looks like a specific input or a genuine memory-safety fault rather than gradual exhaustion.

   Three cheap things that would narrow it decisively:

   # 1. How many files actually exceeded 1s? (the true slow-file population)
   grep -c 'extract.file.done' /data/codebase/.cache/codebase-memory-mcp/logs/.worker-log-DxCd2o
   
   # 2. Anything that is not routine progress — this is where a real clue would be
   grep -E 'level=(warn|error)' /data/codebase/.cache/codebase-memory-mcp/logs/.worker-log-DxCd2o | tail -50
   
   # 3. Does it die at the SAME point every time?
   for f in /data/codebase/.cache/codebase-memory-mcp/logs/.worker-log-*; do
     echo "$f: $(grep -o 'done=[0-9]*' "$f" | tail -1)"
   done

   Number 3 is the one I care about most. If every crash stops near the same done= count, it is a specific file and we can find it. If they stop at scattered points, it is resource exhaustion or a race, which is a different hunt entirely.

   Sorry for sending you down the per-worker path — that theory is now dead, and your data killed it.
10. sreehari-malapati-myprod commented on Aug 15, 2026

    

    sreehari-malapati-myprod

    on Aug 15, 2026

    Last edited by sreehari-malapati-myprod

    Author

    More actions

    successful run with 16GB and not tried on 80GB with v0.9.0

    v0.9.0 indexed this repository in ~13 minutes ...
    but same branch is complated with v0.9.0

    with CBM_WORKERS=8. RUN

    grep -c 'extract.file.done' /data/codebase/.cache/codebase-memory-mcp/logs/.worker-log-DxCd2o
    365
    grep -c 'extract.file.done' /data/codebase/.cache/codebase-memory-mcp/logs/.worker-log-uiSaGE
    346

    grep -E 'level=(warn|error)' /data/codebase/.cache/codebase-memory-mcp/logs/.worker-log-DxCd2o | tail -50
    level=warn msg=daemon.private_dir_group_writable_ancestor mode=0775
    level=warn msg=daemon.private_dir_group_writable_ancestor mode=0775
    level=warn msg=pipeline.route path=full reason=invalid_existing_db
    level=warn msg=index.retain_capped path=dpdeps-i386,bsdx.mk bytes=38470510
    level=warn msg=mem.pressure.warn rss_mb=48200 budget_mb=48193 pct=100
    level=warn msg=mem.backpressure.futile action=soft_overshoot

    grep -E 'level=(warn|error)' /data/codebase/.cache/codebase-memory-mcp/logs/.worker-log-uiSaGE | tail -50
    level=warn msg=daemon.private_dir_group_writable_ancestor mode=0775
    level=warn msg=daemon.private_dir_group_writable_ancestor mode=0775
    level=warn msg=pipeline.route path=full reason=invalid_existing_db
    level=warn msg=index.retain_capped path=dpdeps-i386,bsdx.mk bytes=38470510
    level=warn msg=mem.pressure.warn rss_mb=48194 budget_mb=48193 pct=100
    level=warn msg=mem.backpressure.futile action=soft_overshoot

    grep -E 'level=(warn|error)' /data/codebase/.cache/codebase-memory-mcp/logs/.worker-log-TeG742 | tail -50
    level=warn msg=daemon.private_dir_group_writable_ancestor mode=0775
    level=warn msg=daemon.private_dir_group_writable_ancestor mode=0775
    level=warn msg=pipeline.route path=full reason=invalid_existing_db
    level=warn msg=index.retain_capped path=dpdeps-i386,bsdx.mk bytes=38470510
    level=warn msg=mem.pressure.warn rss_mb=48194 budget_mb=48193 pct=100
    level=warn msg=mem.backpressure.futile action=soft_overshoot

    for f in /data/codebase/.cache/codebase-memory-mcp/logs/.worker-log-; do echo "$f: $(grep -o 'done=[0-9]' "$f" | tail -1)"; done
    /data/codebase/.cache/codebase-memory-mcp/logs/.worker-log-DxCd2o: done=106900
    /data/codebase/.cache/codebase-memory-mcp/logs/.worker-log-TeG742: done=107580
    /data/codebase/.cache/codebase-memory-mcp/logs/.worker-log-uiSaGE: done=105390
11. sreehari-malapati-myprod commented on Aug 15, 2026

    

    sreehari-malapati-myprod

    on Aug 15, 2026

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    cat dpdeps-i386,bsdx.mk |wc -l
    416023

    time CBM_WORKERS=8 HOME=/data/codebase ./codebase-memory-mcp cli index_repository --repo-path /data/src/DEV_COMMON_BRANCH --mode full --name DEV_COMMON_BRANCH --persistence true
    Preparing one-shot local CBM command...
    level=warn msg=daemon.private_dir_group_writable_ancestor mode=0775
    level=warn msg=daemon.private_dir_group_writable_ancestor mode=0775
    level=info msg=version_cohort.claimed_unheld build=df1b97b0f5266924072a0c020027a14fa1890fa7457183c2106ff7eab4b62122
    level=info msg=mem.allocator.owned classes=all
    level=info msg=mem.init budget_mb=192775 total_ram_mb=385550 source=ram_fraction
    Running index_repository locally...
    hint: this command started a temporary CBM daemon. codebase-memory-mcp daemon start keeps one warm and removes this startup cost from every CLI command.

    index worker ended with crash (exit=-1, signal=11); inspect log: /data/codebase/.cache/codebase-memory-mcp/logs/.worker-log-TeG742
    Failed index_repository (2570498 ms)

    real 42m53.034s
    user 0m4.355s
    sys 0m15.525s

    du -sh --exclude=.svn /data/src/DEV_COMMON_BRANCH/
    16G /data/src/DEV_COMMON_BRANCH/

    mimalloc: warning: thread 0x7F4D2138D6C0: cannot use OS memory since it is too large with respect to the maximum object size (size 16384 MiB, meta-info slices 585, maximum object slices are 512)level=info msg=parallel.extract.progress done=29480 total=175637
    level=info msg=parallel.extract.progress done=29490 total=175637
    level=info msg=parallel.extract.progress done=29500 total=175637
    level=info msg=parallel.extract.progress done=29510 total=175637
    level=info msg=parallel.extract.progress done=29520 total=175637
    level=info msg=parallel.extract.progress done=29530 total=175637
    level=info msg=parallel.extract.progress done=29540 total=175637
    mimalloc: warning: cannot use OS memory since it is too large with respect to the maximum object size (size 16384 MiB, meta-info slices 585, maximum object slices are 512)level=info msg=parallel.extract.progress done=29550 total=175637
    level=info msg=parallel.extract.progress done=29560 total=175637
    level=info msg=parallel.extract.progress done=29570 total=175637
    level=info msg=parallel.extract.progress done=29580 total=175637
    level=info msg=parallel.extract.progress done=29590 total=175637
    level=info msg=parallel.extract.progress done=29600 total=175637
    level=info msg=parallel.extract.progress done=29610 total=175637
    level=info msg=parallel.extract.progress done=29620 total=175637
    level=info msg=parallel.extract.progress done=29630 total=175637
    mimalloc: warning: thread 0x7F4D1EB886C0: cannot use OS memory since it is too large with respect to the maximum object size (size 16384 MiB, meta-info slices 585, maximum object slices are 512)level=info msg=parallel.extract.progress done=29640 total=175637
12. sreehari-malapati-myprod commented on Aug 15, 2026

    

    sreehari-malapati-myprod

    on Aug 15, 2026

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    removed this file dpdeps-i386,bsdx.mk and again ran it ..still it is crashed

    level=info msg=parallel.extract.progress done=105800 total=175636
    level=info msg=parallel.extract.progress done=105990 total=175636
    level=info msg=parallel.extract.progress done=105950 total=175636
    mimalloc: error: thread 0x7F2C60ACB6C0: unable to allocate memory (160 bytes)
    mimalloc: error: thread 0x7F2C60ACB6C0: out of memory in 'new'
    ".worker-log-spSVvZ" [noeol] 17017L, 1544405B

    .cache/codebase-memory-mcp/logs# grep -E 'level=(warn|error)' /data/codebase/.cache/codebase-memory-mcp/logs/.worker-log-spSVvZ | tail -50
    level=warn msg=daemon.private_dir_group_writable_ancestor mode=0775
    level=warn msg=daemon.private_dir_group_writable_ancestor mode=0775
    level=warn msg=pipeline.route path=full reason=invalid_existing_db
    level=warn msg=index.retain_capped path=hdrparser_igp.c bytes=631350
    level=warn msg=mem.pressure.warn rss_mb=48194 budget_mb=48193 pct=100
    level=warn msg=mem.backpressure.futile action=soft_overshoot

    i do know how many files i have to delete like from branch
13. DeusData commented on Aug 15, 2026

    

    DeusData

    on Aug 15, 2026

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    That grep found it. These three lines are the whole story:

    level=warn msg=mem.pressure.warn rss_mb=48194 budget_mb=48193 pct=100
    level=warn msg=mem.backpressure.futile action=soft_overshoot
    mimalloc: error: unable to allocate memory (160 bytes)
    

    You are not running out of machine memory. You are hitting a budget we impose on ourselves, and then failing badly instead of coping. RSS reaches the budget exactly (48194 vs 48193), our backpressure tries to relieve it and reports itself futile, and immediately after that a 160-byte allocation fails. A 160-byte failure on a 376 GB host is not memory exhaustion — it is our own cap refusing the allocation. That also explains why deleting files never helped and why CBM_WORKERS=16 and =8 made no difference: the cap is the wall, not the parallelism.

    Two bugs on our side, and I want to name both:

    1. The budget is far too small for this machine. Your parent process resolved budget_mb=192775 (~188 GB, source=ram_fraction) but the indexing worker is running against 48193 MB — almost exactly a quarter of it. On a host with 376 GB, capping the worker at 48 GB and then dying is the wrong outcome.
    2. backpressure.futile should not be followed by a crash. Once we know we cannot relieve pressure, the honest behaviours are to degrade (spill, shrink batches, reduce concurrency) or to stop with a clear message naming the budget and how to raise it. Aborting inside the allocator, with no error in the log and a bare signal=6/signal=11 at the top level, is the worst of the options and is why this looked like a mysterious OOM for days.

    Worth trying right now — raise the budget explicitly:

    CBM_MEM_BUDGET_MB=300000 HOME=/data/codebase ./codebase-memory-mcp cli index_repository \
      --repo-path /data/src/DEV_COMMON_BRANCH --mode full --name DEV_COMMON_BRANCH --persistence true

    CBM_MEM_BUDGET_MB overrides the RAM-fraction default and is clamped to physical RAM, so 300000 (~293 GB) is safe on a 376 GB box. Please do not delete any more files — that was never the problem, and I am sorry you spent time on it.

    When it starts, the first useful line is:

    level=info msg=mem.init budget_mb=... total_ram_mb=385550 source=...
    

    source should stop saying ram_fraction. If a line mem.budget.worker_cap also appears, that tells us the worker is being hard-capped below what you asked for — which would be bug 1 above, confirmed, and exactly what needs fixing.

    Two outcomes, both informative: if it completes, this is a budget-sizing bug and you have your index. If it still dies at the same rss_mb == budget_mb boundary with a higher number, then something is genuinely consuming hundreds of gigabytes on a 16 GB tree, and that is a leak worth hunting on its own.

    Thank you for staying with this through five runs and for running every command asked. The mem.pressure / backpressure.futile pair was the missing piece, and it was in your logs the whole time — we simply never asked for the right ten lines.
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15. DeusData commented on Aug 15, 2026

    

    DeusData

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    Follow-up — I can now explain the slowdown and the allocation failures as one mechanism, and there is a second workaround that needs no root.

    Measured on Linux, same corpus, varying only the worker count:

    	mimalloc mappings	peak RSS
    v0.9.0, 18 workers	10	13.73 GB
    v0.9.0, 4 workers	10	13.40 GB
    v0.10.5, 1 worker	999	4.11 GB
    v0.10.5, 4 workers	8,460	15.99 GB
    v0.10.5, 18 workers	11,965	18.87 GB

    v0.9.0 holds a constant 10 mimalloc mappings regardless of concurrency, because mimalloc only served the bound populations (sqlite, tree-sitter) there. From 0.10.x, with ordinary malloc/new routed through mimalloc on Linux, each worker thread accumulates its own segments — so the mapping count scales with concurrency.

    That one fact accounts for both symptoms you saw:

    • The 100x slowdown: per-thread segment churn is an mmap/munmap storm, and those serialize on the kernel's per-process mmap_lock. At 96 threads that contention dominates, which is why you saw 1.2% progress in 45 minutes rather than a proportional slowdown.
    • The allocation failures: the VMA count climbs toward vm.max_map_count, and once it is hit mmap fails for any size — hence 10 KB failing while free -g showed 246 GB available.

    Second workaround: cap the worker count

    CBM_WORKERS=16 HOME=/data/codebase ./codebase-memory-mcp cli index_repository \
      --repo-path /data/src/DEV_COMMON_BRANCH --mode full --name DEV_COMMON_BRANCH --persistence true

    On your 96-CPU host the default worker count is the multiplier driving both effects, so this should help more than it costs. It needs no root, unlike the sysctl. Combining both (raised vm.max_map_count and a reduced CBM_WORKERS) is the configuration I would try first.

    Worth knowing: in my run, going from 18 workers to 1 cut peak RSS from 18.87 GB to 4.11 GB — so if you are memory-constrained rather than time-constrained, a low worker count is a large lever.

    I would still like the two numbers from my previous comment (cat /proc/sys/vm/max_map_count, and wc -l < /proc/<worker-pid>/maps during a run) — with those I can tell you exactly which of the two limits you are hitting, and confirm this analysis against your host rather than my scaled reproduction.
16. sreehari-malapati-myprod commented on Aug 16, 2026

    

    sreehari-malapati-myprod

    on Aug 16, 2026

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    Now I have executed with sudo sysctl -w vm.max_map_count=1048576 and above issues passed but Now it is different problem...

    ~/.cache/codebase-memory-mcp# ls -latr
    total 14158832
    drwxr-xr-x 3 root root 4096 Jul 17 05:04 ..
    -rw------- 1 root root 12288 Aug 15 19:44 _config.db
    -rw------- 1 root root 0 Aug 15 19:44 DEV_COMMON_BRANCH.db.stage.mlls0G
    -rw------- 1 root root 13023576064 Aug 15 20:15 DEV_COMMON_BRANCH.db.stage.mlls0G.stage.8RVTws
    -rw------- 1 root root 196608 Aug 15 20:30 DEV_COMMON_BRANCH.db.stage.mlls0G.stage.8RVTws-shm
    -rw------- 1 root root 1474903352 Aug 15 20:30 DEV_COMMON_BRANCH.db.stage.mlls0G.stage.8RVTws-wal
    -rw------- 1 root root 0 Aug 15 20:30 DEV_COMMON_BRANCH.db.stage.8XwfUD
    drwx------ 3 root root 4096 Aug 15 20:30 .
    drwx------ 2 root root 4096 Aug 15 20:32 logs

    at end of DB update its started again re-index with another worker

    ~/.cache/codebase-memory-mcp/logs# ls -latr
    total 4616
    -rw------- 1 root root 2554688 Aug 15 20:15 .worker-log-6AcQ9f
    -rw------- 1 root root 773 Aug 15 20:30 cbm-daemon.log
    -rw------- 1 root root 0 Aug 15 20:30 .daemon-index-quarantine-rEgqcx
    -rw------- 1 root root 0 Aug 15 20:30 .worker-response-hVYyiQ
    drwx------ 3 root root 4096 Aug 15 20:30 ..
    drwx------ 2 root root 4096 Aug 15 20:32 .
    -rw------- 1 root root 717353 Aug 15 20:34 .worker-log-HtMzzq
    -rw------- 1 root root 1422249 Aug 15 20:34 .daemon-index-marker-5m1Em9

    tail -n 100 .worker-log-6AcQ9f
    s=5
    level=info msg=pass.k8s.depmanifest file=go.mod deps=11
    level=info msg=pass.done pass=k8s kustomize=0 manifests=48
    level=info msg=pass.timing pass=k8s elapsed_ms=122
    level=info msg=pass.start pass=tests
    level=info msg=pass.done pass=tests tests=33373 tests_file=16
    level=info msg=pass.timing pass=tests elapsed_ms=2582
    level=info msg=pass.timing pass=githistory_compute elapsed_ms=8
    level=info msg=pass.done pass=githistory commits=0 edges=0
    level=info msg=pass.decorator_tags candidates=yes tagged=yes
    level=info msg=pass.timing pass=decorator_tags elapsed_ms=2510
    level=info msg=configlinker.truncated side=config cap=4096
    level=info msg=configlinker.truncated side=code cap=8192
    level=info msg=configlinker.strategy name=key_symbol edges=582
    level=info msg=configlinker.strategy name=dep_import edges=0
    level=info msg=configlinker.strategy name=file_ref edges=0
    level=info msg=configlinker.done total=582
    level=info msg=pass.timing pass=configlink elapsed_ms=1610
    level=info msg=pass.route_nodes created=2308
    level=info msg=pass.prefix_bridge connected=73
    level=info msg=pass.route_match infra_matched=4
    level=info msg=pass.data_flows created=130 skipped_has_call=0
    level=info msg=pass.route_nodes.grpc routes=9
    level=info msg=pass.timing pass=route_match elapsed_ms=11371
    level=info msg=pass.start pass=similarity
    level=info msg=pass.similarity.collected nodes_with_fp=757870
    level=info msg=pass.done pass=similarity edges=503690
    level=info msg=pass.timing pass=similarity elapsed_ms=7680
    level=info msg=pass.start pass=semantic_edges
    level=info msg=pass.semantic.collected functions=1409529
    level=info msg=pass.semantic.token_vectors count=227255
    level=info msg=pass.semantic.vectors_stored count=1409529
    level=info msg=pass.semantic.lsh_built functions=1409529 bands=16
    level=info msg=pass.done pass=semantic_edges edges=515
    level=info msg=pass.timing pass=semantic_edges elapsed_ms=74979
    level=info msg=pass.complexity functions=1409529
    level=info msg=pass.timing pass=complexity elapsed_ms=4370
    level=info msg=pass.timing pass=semantic_manifest_hash files=175636 workers=96 elapsed_ms=1600
    level=info msg=mem.pressure.ok rss_mb=13511 budget_mb=48193 pct=28
    level=info msg=gbuf.dump nodes=5277875 edges=19732986
    level=info msg=publish.timing block=writes elapsed_ms=7948
    level=info msg=publish.timing block=get_project elapsed_ms=0. -> it stuck so much time and got restarted with another worker PID

    .worker-log-HtMzzq

    level=warn msg=daemon.private_dir_group_writable_ancestor mode=0775
    level=warn msg=daemon.private_dir_group_writable_ancestor mode=0775
    level=info msg=mem.allocator.owned classes=all
    level=info msg=mem.budget.worker_cap cap_bytes=50534927872
    level=info msg=mem.init budget_mb=48193 total_ram_mb=385550 source=daemon_worker_cap
    warning: passing raw JSON to 'cli index_repository' is deprecated and will be removed in a future release; use flags (run 'cli index_repository --help'), --args-file , or piped stdin.
    level=info msg=pipeline.discover files=175636 elapsed_ms=2156
    level=info msg=pass.timing pass=semantic_manifest_hash files=175636 workers=96 elapsed_ms=1247
    level=warn msg=pipeline.route path=full reason=invalid_existing_db
    level=info msg=pipeline.route path=full
    level=info msg=pass.start pass=structure files=175636
    level=info msg=pass.done pass=structure nodes=209652 edges=205923
    level=info msg=pass.timing pass=structure elapsed_ms=1239
    level=info msg=pipeline.mode mode=parallel workers=96 files=175636
    level=info msg=parallel.extract.start files=175636 workers=96
    level=info msg=parallel.extract.retention retain_sources=true total_mb=1024 per_file_mb=32
    level=info msg=parallel.mem.budget total_mb=48193 per_worker_mb=502

    attached progressive log of /proc//maps during the index.

    Progressive.log.pdf

    Index process is ended with after long time .. with no complete db update and no errors silently got killed.

    -rw------- 1 root root 12288 Aug 15 19:44 _config.db
    -rw------- 1 root root 0 Aug 15 19:44 DEV_COMMON_BRANCH.db.stage.mlls0G
    -rw------- 1 root root 13023576064 Aug 15 20:15 DEV_COMMON_BRANCH.db.stage.mlls0G.stage.8RVTws
    -rw------- 1 root root 196608 Aug 15 20:30 DEV_COMMON_BRANCH.db.stage.mlls0G.stage.8RVTws-shm
    -rw------- 1 root root 1474903352 Aug 15 20:30 DEV_COMMON_BRANCH.db.stage.mlls0G.stage.8RVTws-wal
    -rw------- 1 root root 0 Aug 15 20:30 DEV_COMMON_BRANCH.db.stage.8XwfUD
    -rw------- 1 root root 13013024768 Aug 15 21:01 DEV_COMMON_BRANCH.db.stage.8XwfUD.stage.4lOyoJ
    -rw------- 1 root root 196608 Aug 15 21:16 DEV_COMMON_BRANCH.db.stage.8XwfUD.stage.4lOyoJ-shm
    -rw------- 1 root root 1473526592 Aug 15 21:16 DEV_COMMON_BRANCH.db.stage.8XwfUD.stage.4lOyoJ-wal
    drwx------ 2 root root 4096 Aug 15 21:16 logs
17. DeusData

    added a commit that references this issue on Aug 16, 2026

    Merge pull request #1666 from DeusData/fix/linux-arena-eager-commit

    ...

    4353119
18. DeusData commented on Aug 16, 2026

    

    DeusData

    on Aug 16, 2026

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    The Linux allocator fix has landed on main (merge commit 4353119, PR #1666): mimalloc's own Linux default for arena_eager_commit is restored, cutting the index worker's memory mappings ~23% at source and removing the VMA-fragmentation pressure that made small allocations fail under vm.max_map_count while the host had memory to spare.

    Both workarounds from earlier in this thread remain valid on 0.10.4/0.10.5 until the next release ships:

    • raise vm.max_map_count (needs root), and/or
    • cap CBM_WORKERS (no root; also cuts peak RSS substantially).

    The deeper follow-up — pooling the 64 KB–3 MB extraction buffers so the worker stops reserving ~2× its RSS in address space — is tracked for a separate change. The measurement I asked for earlier (cat /proc/sys/vm/max_map_count + wc -l < /proc/<worker-pid>/maps during a run) would still be valuable to confirm the mechanism on your exact host, but the fix does not depend on it.

    Thank you again for the caliber of this report — the progress counter, allocator lines, and free -g output were what made the mechanism findable without access to your tree.
19. DeusData

    added

    priority/highNeeds near-term maintainer attention; high-impact bug, regression, safety issue, or release blocker.Needs near-term maintainer attention; high-impact bug, regression, safety issue, or release blocker.

    awaiting-reporterWaiting on the reporter for info/repro; stale bot will warn then closeWaiting on the reporter for info/repro; stale bot will warn then close

    and removed

    parsing/qualityGraph extraction bugs, false positives, missing edgesGraph extraction bugs, false positives, missing edges

    windowsWindows-specific issuesWindows-specific issues

    on Aug 18, 2026
20. DeusData commented on Aug 18, 2026

    

    DeusData

    on Aug 18, 2026

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    Thank you again for the host measurements that isolated the Linux allocator mechanism. v0.10.6 contains the #1666 fix at merge commit 43531195fef8, restoring mimalloc's Linux arena eager-commit default and reducing the VMA pressure identified in this thread.

    Please rerun the same repository and command with v0.10.6 and report whether it completes. If it still fails, the final worker-log phase and a sampled /proc/<worker-pid>/maps count are the most useful next evidence; no proprietary source is needed. I have marked this awaiting-reporter because the released fix plausibly addresses the original crash, while the later publication/restart behavior may remain a separate bug. Thank you for staying with a difficult large-scale reproduction.
21. github-actions commented on Aug 18, 2026

    

    github-actionsBot

    on Aug 18, 2026 – with GitHub Actions

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    Thanks for the report! To move this forward we need a bit more so we can reproduce it ourselves:

    • the codebase-memory-mcp --version you're on
    • the exact steps or command you ran
    • a public repo (or a small dummy snippet) that shows the problem — please don't paste proprietary code

    Once that's here we'll pick it straight back up. Heads-up: issues left awaiting-reporter are automatically closed after a few weeks of silence, but a comment reopens the door anytime.
22. sreehari-malapati-myprod commented on Aug 18, 2026

    

    sreehari-malapati-myprod

    on Aug 18, 2026

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    it took long time to complet .. and long time took at the end only

    cat /proc/sys/vm/max_map_count
    1048576

    ./codebase-memory-mcp --version
    codebase-memory-mcp 0.10.6

    time HOME=/data/codebase ./codebase-memory-mcp cli index_repository --repo-path /data/src/DEV_COMMON_BRANCH --mode full --name DEV_COMMON_BRANCH --persistence true

    {"project":"DEV_COMMON_BRANCH","excluded":{"dirs":[".codebase-memory","vendor",".svn","dist","chassism/env"],"count":115,"truncated":true},"skipped_count":283,"logfile":"/data/codebase/.cache/codebase-memory-mcp/logs/DEV_COMMON_BRANCH-1787047758.log","skipped":{"files":[{"path":"struct.h","reason":"parse timeout","phase":"extract"},{"path":"stream.min.js","reason":"parse timeout","phase":"extract"},{"path":"l2tp.cc","reason":"parse timeout","phase":"extract"},{"path":"P1StandardFormat.csv","reason":"parse timeout","phase":"extract"},{"path":"fpgadata.c","reason":"parse timeout","phase":"extract"}],"count":283,"truncated":true},"parse_partial_count":67956,"parse_partial":{"files":[{"path":"config/_ui.c","error_ranges":"449-449,537-537,538-538,572-572,573-573,602-602,603-603,626-626,686-686,1474-1474,1475-1475,1735-1735,1736-1736,1760-1760,1996-1996,1997-1997,2119-2119,2212-2212,2213-2213,2250-2250,2328-2328,2375-2375,2376-2376,2448-2448,2559-2559,2560-2560,2838-2838,2839-2839,2840-2840,2841-2841,3675-3675,3855-3855,3856-3856,3915-3915,3995-3995,4091-4091,4145-4145,4244-4244,4499-4499,4515-4515,4537-4537,4593-4593,5180-5180,5213-5213,5707-5707,6371-6371,6848-6848,7685-7685,8438-8438,8603-8603,8882-8882,9161-9161,9482-9482,9659-9659,10262-10262,10403-10403,11263-11263,12117-12117,13051-13051,13359-13359,13381-13381,13733-13733,14708-14708,14875-14875"},{"path":"jifd.c","error_ranges":"574-574,775-775,1030-1030,1204-1204,1475-1475,1501-1501,1512-1512,1540-1540,2967-2967,3307-3307,3397-3397,5173-5173,5174-5174,5175-5175,6460-6460,7096-7096,8496-8496,9226-9226,9596-9596,9802-9802,9806-9806,9822-9822,9842-9842,9888-9888,9892-9892,9903-9903,10063-10063"},{"path":"trans.c","error_ranges":"196-196,196-196,339-339,339-339,376-376,376-377,403-403,403-403,810-810,5587-5587,5799-5799,5876-5876,5953-5953,5998-5998,6049-6049,6147-6147,10166-10166,11988-11988,11988-11988,13336-13336,13336-13336,13365-13365,13365-13365"},{"path":"session.c","error_ranges":"242-242,313-313,357-357,722-722,819-819,879-879,960-960,1196-1196,1347-1347,1428-1428,1460-1460,1500-1500,1607-1607,1691-1691,1826-1826,1918-1918,2068-2068,3340-3340,3524-3524,3536-3536,3543-3543,3735-3735,4562-4562,5903-5903,6878-6878,7107-7107,7165-7165,7192-7192,7686-7686,7895-7895,8083-8083,8150-8150,8234-8234,8443-8443,8453-8453,9135-9135,9224-9224,9227-9227,9306-9306,9496-9496,9497-9497,9588-9588,9820-9820,9861-9861"},{"path":"restart.c","error_ranges":"296-296,297-297,6950-6950,6975-6975,6999-6999,7680-7680,7681-7681,7713-7713,7714-7714,7743-7743,7744-7744,7825-7825,7826-7826,8017-8017,8018-8018,9515-9515,9516-9516"}],"count":67956,"truncated":true,"note":"Indexed, but constructs in these line ranges may be missing (best-effort signal); examples only — full list via index_status or 'logfile'."},"not_indexed_files_count":2780,"not_indexed_files":{"files":[{"path":"740-121944-pem-sec.bin","reason":"ignored-suffix"},{"path":"05417CE_r7.bin","reason":"ignored-suffix"},{"path":"sky0.bin","reason":"ignored-suffix"},{"path":"bios.bin","reason":"ignored-suffix"},{"path":"v0.4.bin","reason":"ignored-suffix"}],"count":2780,"truncated":true,"note":"Excluded by design (gitignore/.cbmignore/skip-lists); examples only — full list in 'logfile'."},"nodes":5066809,"edges":19295279,"expected_nodes":5066809,"expected_edges":19295279,"adr_present":false,"adr_hint":"Project indexed. Consider creating an Architecture Decision Record: explore the codebase with get_architecture(aspects=['all']), then use manage_adr(mode='update') to persist architectural insights across sessions.","artifact_present":true,"artifact_hint":"Persistent artifact written to .codebase-memory/graph.db.zst. Commit this file to share the index with teammates.","status":"indexed"}
    Completed index_repository (2986615 ms)

    real 49m49.080s
    user 0m5.096s
    sys 0m20.527s

    MAX memory
    /.cache/codebase-memory-mcp/logs# free -g
    total used free shared buff/cache available
    Mem: 376 299 30 0 46 74
    Swap: 0 0 0

    Max one:
    wc -l /proc/964951/maps
    134203 /proc/964951/maps

    .worker-log-79XUgm -> this worker log got deleted after completion of indexing. not able capture end log where it is taking long time.

    DEV_COMMON_BRANCH-1787047758.log -> it has lot files partial parse with line number
23. sreehari-malapati-myprod commented on Aug 18, 2026

    

    sreehari-malapati-myprod

    on Aug 18, 2026

    Last edited by sreehari-malapati-myprod

    Author

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    it is failing with max_map_count 65530

    cat /proc/sys/vm/max_map_count
    65530

    ./codebase-memory-mcp --version
    codebase-memory-mcp 0.10.6

    time HOME=/data/codebase/test ./codebase-memory-mcp cli index_repository --repo-path /data/src/DEV_COMMON_BRANCH --mode full --name DEV_COMMON_BRANCH --persistence true
    Preparing one-shot local CBM command...
    level=warn msg=daemon.private_dir_group_writable_ancestor mode=0775
    level=warn msg=daemon.private_dir_group_writable_ancestor mode=0775
    level=info msg=version_cohort.claimed_unheld build=8eea4ec828cd0cfa1c406cda5640a8dfa5381878b4d96b106cdc53aff3733508
    level=info msg=mem.allocator.owned classes=all
    level=info msg=mem.init budget_mb=192775 total_ram_mb=385550 source=ram_fraction
    Running index_repository locally...
    hint: this command started a temporary CBM daemon. codebase-memory-mcp daemon start keeps one warm and removes this startup cost from every CLI command.

    pc_msg_defs.h
    mimalloc: error: thread 0x7FAB269EF6C0: unable to allocate memory (10240 bytes)
    mimalloc: error: thread 0x7FAB3A2166C0: unable to allocate memory (14 bytes)
    mimalloc: error: thread 0x7FAB1E9DF6C0: unable to allocate memory (10240 bytes)
    level=info msg=parallel.extract.file.start pos=127862 size_kb=1 path=t_msg.h
    mimalloc: error: thread 0x7FAB131C86C0: unable to allocate memory (10240 bytes)
    mimalloc: error: thread 0x7FAB1E1DE6C0: unable to allocate memory (4096 bytes)
    level=info msg=parallel.extract.file.start pos=127863 size_kb=1 path=phase2.h
    level=info msg=parallel.extract.file.start pos=127864 size_kb=1 path=Exception.h
    mimalloc: error: thread 0x7FAB1E1DE6C0: unable to allocate memory (4496 bytes)
    mimalloc: error: thread 0x7FAB1D1DC6C0: unable to allocate memory (524288 bytes)
    level=info msg=parallel.extract.file.start pos=127865 size_kb=1 path=Makefile.inc
    mimalloc: error: thread 0x7FAB1E1DE6C0: unable to allocate memory (4096 bytes)
    level=info msg=parallel.extract.file.start pos=127866 size_kb=1 path=rm9220_ukern.h
    level=info msg=parallel.extract.file.start pos=127868 size_kb=1 path=Makefile.inc
    mimalloc: error: thread 0x7FAB1B1D86C0: unable to allocate memory (262144 bytes)
    level=info msg=parallel.extract.progress done=127770 total=175636
    level=info msg=parallel.extract.file.start pos=127869 size_kb=1 path=Makefile.inc
    level=info msg=parallel.extract.file.start pos=127870 size_kb=1 path=junoscript/web/html/jwebui/src/services/i18n/locale/ja_JP/device.json
    level=info msg=parallel.extract.file.start pos=127871 size_kb=1 path=sc_pattern.h
    mimalloc: error: thread 0x7FAB35A0D6C0: unable to allocate memory (256 bytes)
    level=info msg=parallel.extract.file.start pos=127872 size_kb=1 path=sc_pattern.h
    ".worker-log-c1Rwcq" 145148L, 16859291B 145148,1 Bot
24. DeusData

    removed

    awaiting-reporterWaiting on the reporter for info/repro; stale bot will warn then closeWaiting on the reporter for info/repro; stale bot will warn then close

    on Sep 5, 2026
25. DeusData commented on Sep 19, 2026

    

    DeusData

    on Sep 19, 2026

    Owner

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    Thank you for the paired v0.10.6 results. Success with a raised mapping limit is a workaround; failure at 65530 means the original host case was not fully resolved. The later publication delay and diagnostic retention remain distinct, and another costly run should wait for a narrower investigation plan.
26. DeusData commented on Oct 25, 2026

    

    DeusData

    on Oct 25, 2026

    Owner

    More actions

    Thank you for the paired retests. The failure at the default mapping limit remains unresolved, even though the raised-limit run completed; another costly run is not needed before a narrower maintainer investigation. Sorry for the delay; this is waiting on maintainer follow-up, and I’ll follow up soon.