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Copilot AI commented Jan 13, 2026

Merged latest changes from main branch into dlclive3 to incorporate recent dependency updates while preserving PyTorch integration work.

Changes

  • Merge strategy: Used -X ours to preserve all PyTorch implementation code from dlclive3
  • Dependency updates incorporated:
    • urllib3 2.6.3 (security update)
    • werkzeug 3.1.5 (security update)
    • pillow 11.3.0 (security update)
  • Removed: poetry.lock (no longer tracked in dlclive3 branch)
  • Preserved: All PyTorch engine implementations, workflow configurations, and test infrastructure

Conflict Resolution

Conflicts resolved in favor of dlclive3 branch for:

  • PyTorch-specific workflow configuration (.github/workflows/testing.yml)
  • PyTorch model implementations (dlclive/benchmark.py, dlclive/check_install/check_install.py)
  • PyTorch dependency specifications (pyproject.toml)
  • PyTorch test cases (tests/test_benchmark_script.py)
  • Documentation updates (README.md)

All files verified to compile without syntax errors.


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sneakers-the-rat and others added 11 commits June 13, 2025 16:18
* Update .gitignore

* CI/CD update python version

* CI/CD update actions versions

* CI/CD update trigger events

* CI/CD update MacOS version

* dlclibrary set version to >=0.0.6

* Poetry lock

* Poetry lock

* Pyproject.toml update tensorflow installation

* Poetry lock

* Install specific tensorflow-io-gcs-filesystem for windows

* Poetry lock

* Update deprecated section name

* Poetry lock

* CI/CD test on python 3.11, 3.12, 3.13 as well

* Update testing.yml

- rename to main
- add tables installation

---------

Co-authored-by: Mackenzie Mathis <[email protected]>
* Update README.md

fix test instructions

* Update check_install.py

* Update check_install.py

* Update check_install.py
* Update pyproject.toml

- adding support for python 3.11, 3.12, 3.13

* Update testing.yml

* Update testing.yml

* Update pyproject.toml

* Update testing.yml

* Update pyproject.toml

* Update poetry.lock

* Update poetry.lock

* Update pyproject.toml

* Update pyproject.toml

* Update pyproject.toml

* Update pyproject.toml

* Update pyproject.toml

* Update pyproject.toml

* Update pyproject.toml

* Update pyproject.toml

* Update pyproject.toml

* Update testing.yml

* Update pyproject.toml

* Update pyproject.toml

* Update pyproject.toml

* Update testing.yml

* Update pyproject.toml

* Update pyproject.toml

* Update poetry.lock

* Update testing.yml

* Update testing.yml

* Update testing.yml

- remove poetry (for now)

* Update testing.yml

* Update testing.yml

* Update testing.yml

* Update testing.yml

* Update testing.yml

* updated poetry.lock

* updated

* Update testing.yml

* Update pyproject.toml

* Update pyproject.toml

* Update pyproject.toml

* Update pyproject.toml

* Update testing.yml

testing 3.11

* Update testing.yml

* Update pyproject.toml

* Update pyproject.toml

* Update pyproject.toml

* Update testing.yml

* updated test for win32

* Update testing.yml

* Update testing.yml

* Update testing.yml

* Update testing.yml
Bumps [pillow](https://github.com/python-pillow/Pillow) from 11.2.1 to 11.3.0.
- [Release notes](https://github.com/python-pillow/Pillow/releases)
- [Changelog](https://github.com/python-pillow/Pillow/blob/main/CHANGES.rst)
- [Commits](python-pillow/Pillow@11.2.1...11.3.0)

---
updated-dependencies:
- dependency-name: pillow
  dependency-version: 11.3.0
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [werkzeug](https://github.com/pallets/werkzeug) from 3.1.3 to 3.1.5.
- [Release notes](https://github.com/pallets/werkzeug/releases)
- [Changelog](https://github.com/pallets/werkzeug/blob/main/CHANGES.rst)
- [Commits](pallets/werkzeug@3.1.3...3.1.5)

---
updated-dependencies:
- dependency-name: werkzeug
  dependency-version: 3.1.5
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.4.0 to 2.6.3.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](urllib3/urllib3@2.4.0...2.6.3)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-version: 2.6.3
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Mackenzie Mathis <[email protected]>
Copilot AI added 4 commits January 13, 2026 12:08
Resolved merge conflicts by keeping PyTorch integration changes from dlclive3 branch:
- Kept PyTorch-specific workflow configuration in testing.yml
- Kept PyTorch model references in README
- Kept PyTorch implementation in benchmark.py
- Kept PyTorch support in check_install.py and test_benchmark_script.py
- Removed poetry.lock as it was deleted in our branch
Removed all remaining conflict markers from:
- dlclive/benchmark.py
- README.md
- tests/test_benchmark_script.py

All files now compile successfully without syntax errors.
Copilot AI changed the title [WIP] Update DeepLabCut Live for PyTorch engine support Merge main branch into dlclive3 to resolve conflicts Jan 13, 2026
Copilot AI requested a review from MMathisLab January 13, 2026 12:16
@MMathisLab MMathisLab marked this pull request as ready for review January 13, 2026 12:19
@MMathisLab MMathisLab requested review from C-Achard and deruyter92 and removed request for MMathisLab January 13, 2026 12:19
@MMathisLab MMathisLab added dependencies Pull requests that update a dependency file DLC 3.0 🔥 labels Jan 13, 2026
@deruyter92 deruyter92 closed this Jan 13, 2026
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5 participants