Add 9 missing papers to the reference list#5363
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Added papers confirmed to use Oceananigans that were missing from the "Papers and preprints using Oceananigans" section: - Allende et al. (2026) — ice-ocean interface melting dynamics - Middleton et al. (2025) — splitting ocean cyclone (Science Advances) - Pružina et al. (2025) — double-diffusive convection layer formation (JFM) - Pružina (2025) — staircase formation in diffusive convection (JFM) - Lee et al. (2025) — surface waves in a summertime lead (EGUsphere) - Zhang, Kang & Marshall (2024) — icy moon oceans (Science Advances) - Bire et al. (2023) — hydrothermal plumes on icy ocean worlds (JGR Planets) Co-Authored-By: Claude Opus 4.6 <[email protected]>
glwagner
commented
Mar 4, 2026
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| 1. Strong-Wright, J., Chen, S., Constantinou, N. C., Silvestri, S., Wagner, G. L., and Taylor, J. R. (2023). [OceanBioME.jl: A flexible environment for modelling the coupled interactions between ocean biogeochemistry and physics](https://doi.org/10.21105/joss.05669), _Journal of Open Source Software_, **90(8)**, 5669. DOI: [10.21105/joss.05669](https://doi.org/10.21105/joss.05669) | ||
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| 1. Bire, S., Mittal, T., Kang, W., Ramadhan, A., Tuckman, P., German, C. R., Thurnherr, A., and Marshall, J. (2023) [Divergent behavior of hydrothermal plumes in fresh versus salty icy ocean worlds](https://doi.org/10.1029/2023JE007740), _Journal of Geophysical Research: Planets_, **128**, e2023JE007740. DOI: [10.1029/2023JE007740](https://doi.org/10.1029/2023JE007740) |
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confused how this paper was missing?
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Suyash should have added it in 2023
Fromme et al. use Oceananigans to generate 3D Rayleigh-Bénard convection training data for their equivariant autoencoder surrogate model. This paper cites the overview preprint (Wagner et al. 2025) rather than the JOSS paper, so it was missed in the initial citation search. Co-Authored-By: Claude Opus 4.6 <[email protected]>
glwagner
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LES study of mixed-layer deepening and internal wave generation under sea ice in free drift. Published in JPO, cites preprint not JOSS. Co-Authored-By: Claude Opus 4.6 <[email protected]>
glwagner
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navidcy
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Mar 4, 2026
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merge away then! |
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This list has grown biiiig... |
briochemc
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Mar 5, 2026
* glw/prescribed-free-surface: (0.105.3) Fix interpolation of terms in chain horizontal derivatives for MutableVerticalDiscretization (CliMA#5339) Fix ContinuousForcing field index mismatch in HydrostaticFreeSurfaceModel (CliMA#5370) Add dependency guardrail to Common Pitfalls (CliMA#5371) Fix typo SKR3 -> SRK3 (CliMA#5360) Add new reference to Zheng et al. (2025) in index (CliMA#5364) Add 9 missing papers to the reference list (CliMA#5363) Update papers section in index.md (CliMA#5362) Restructure AGENTS.md into multi-file agent configuration (CliMA#5350) (0.105.2) Fix `with_halo` for a `TripolarGrid` (CliMA#5353) (0.105.2) Fix and test checkpointing with open-domain simulations with a radiation `OpenBoundaryCondition` (CliMA#5347)
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Summary
Cross-referenced ~103 Semantic Scholar citations of the JOSS paper (Ramadhan et al. 2020), Google Scholar citations of the overview preprint (Wagner et al. 2025), and citations of the model development papers against the current reference list, then verified each candidate by reading the paper to confirm Oceananigans usage.
These 9 papers are confirmed to use Oceananigans but were missing from the list:
🤖 Generated with Claude Code