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7 Commits
codes
codes
 
 
CFS_analysis.R
CFS_analysis.R
 
 
CNV level interactions.R
CNV level interactions.R
 
 
CNV_boundary_TAD_boundary.R
CNV_boundary_TAD_boundary.R
 
 
CNV_boundary_TAD_boundary_GM12878.R
CNV_boundary_TAD_boundary_GM12878.R
 
 
CNV_database_Multiple_Myeloma_boudary_TAD_boundary.R
CNV_database_Multiple_Myeloma_boudary_TAD_boundary.R
 
 
CNV_database_boudary_TAD_boundary.R
CNV_database_boudary_TAD_boundary.R
 
 
CNV_dgv.R
CNV_dgv.R
 
 
CombineTwoChromosomes.R
CombineTwoChromosomes.R
 
 
Distance_distribution_of_CNV_Block_boundary_and_TAD_boudary.R
Distance_distribution_of_CNV_Block_boundary_and_TAD_boudary.R
 
 
DrawCNVFigure.R
DrawCNVFigure.R
 
 
FindCompartmentBed.R
FindCompartmentBed.R
 
 
FindLocalHicMatrix.R
FindLocalHicMatrix.R
 
 
GM12878_TAD_level_local_interactions.R
GM12878_TAD_level_local_interactions.R
 
 
GenerateWholeGenomeMatrix.R
GenerateWholeGenomeMatrix.R
 
 
GetCNVofRegions.R
GetCNVofRegions.R
 
 
Interactions between TADs on either side of a CNV.R
Interactions between TADs on either side of a CNV.R
 
 
LocalIS.R
LocalIS.R
 
 
MedianHicScoreInCNVBlock.R
MedianHicScoreInCNVBlock.R
 
 
PlotBiasOfCNV.r
PlotBiasOfCNV.r
 
 
PlotTransHicMatrix.R
PlotTransHicMatrix.R
 
 
PlotTwoChromosomeHic.R
PlotTwoChromosomeHic.R
 
 
Plot_Hi-C_and_epigenetic_peaks_and_expressions.R
Plot_Hi-C_and_epigenetic_peaks_and_expressions.R
 
 
RPMI8226, Interactions between TADs on either side of a CNV.R
RPMI8226, Interactions between TADs on either side of a CNV.R
 
 
RPMI8226_CNV_block_bias.R
RPMI8226_CNV_block_bias.R
 
 
U266_CNV_block_bias.R
U266_CNV_block_bias.R
 
 
U266_CNV_boundary_TAD_boundary.R
U266_CNV_boundary_TAD_boundary.R
 
 
U266_genome_cnv_40kb.R
U266_genome_cnv_40kb.R
 
 
Whole_genome_heatmap_5M.R
Whole_genome_heatmap_5M.R
 
 
all_tad_boundaries.R
all_tad_boundaries.R
 
 
awk_txt2interactions.sh
awk_txt2interactions.sh
 
 
cnv_block_bias.R
cnv_block_bias.R
 
 
compare_genome_cnv_and_hic_cnv_in_hori_figure.R
compare_genome_cnv_and_hic_cnv_in_hori_figure.R
 
 
compare_genome_cnv_and_hic_cnv_in_single_figure.R
compare_genome_cnv_and_hic_cnv_in_single_figure.R
 
 
compartments_genes.R
compartments_genes.R
 
 
epi_peaks_analysis.R
epi_peaks_analysis.R
 
 
example_of_CombineTwoChromosomes.R
example_of_CombineTwoChromosomes.R
 
 
example_of_PlotTwoChromosomeHic.R
example_of_PlotTwoChromosomeHic.R
 
 
findGene.R
findGene.R
 
 
generate_whole_genome_heatmaps.R
generate_whole_genome_heatmaps.R
 
 
getHicScore.R
getHicScore.R
 
 
getLocalHeatmap_test.R
getLocalHeatmap_test.R
 
 
getScore.R
getScore.R
 
 
insulation_score_and_gene_expression.R
insulation_score_and_gene_expression.R
 
 
nearestTADDistance.R
nearestTADDistance.R
 
 
permutate_sites_tad_distance.R
permutate_sites_tad_distance.R
 
 
permutate_sites_tad_distance_U266.R
permutate_sites_tad_distance_U266.R
 
 
plotMultipleData.R
plotMultipleData.R
 
 
plotMultipleData2.R
plotMultipleData2.R
 
 
readme.txt
readme.txt
 
 
rect_heatmap.R
rect_heatmap.R
 
 
test_tri_heatmap_and_rect_heatmap.R
test_tri_heatmap_and_rect_heatmap.R
 
 
the relationship between TADs and AB.R
the relationship between TADs and AB.R
 
 
tri_heatmap.r
tri_heatmap.r
 
 

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3D genome of multiple myeloma

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multiple myeloma project

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