Release Notes

• Restore the declared Rust 1.88 compatibility of the x86-64 CPU-floor
  diagnostic by isolating CPUID calls behind audited wrappers that compile
  with both the older unsafe and newer safe intrinsic signatures.

Install seqproc 0.1.1

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://github.com/COMBINE-lab/seqproc/releases/download/v0.1.1/seqproc-installer.sh | sh

Download seqproc 0.1.1

Release Notes

Initial public release. It includes the preprint functionality plus the
post-preprint correctness, usability, and performance work reviewed for this
release.

• Make seqproc run require an exact, nonempty primary-output topology while
  preserving the deprecated flag-only prefix behavior for one compatibility
  cycle. Unassigned outputs likewise require exactly one target per input lane,
  and primary outputs combined with demultiplexing are rejected rather than
  silently ignored.

• Treat only a closed stdout pipe as normal Unix early-consumer termination
  (silent exit 0). ENOSPC, quota exhaustion, named-pipe/file failures, and all
  other output errors remain nonzero. Output writers retain their target
  identity through the type-erased execution graph so a file EPIPE cannot be
  mistaken for stdout closure.

• Report demultiplexed output topology from the effective writer graph: one
  path sink per emitted read lane, without exposing data-dependent sample
  filenames.

• Propagate ANTISEQUENCE's single-use graph lifecycle and fallible finalization:
  malformed input, output flush/footer failures, and repeated execution now
  produce typed nonzero errors instead of panic, silent truncation, or false
  success.

• Fix mixed-length Hamming seed planning so a fast-path seed is used only when
  it is guaranteed for every literal; this removes a silent false-negative
  case while retaining safe indexed matching.

• Make seqproc's executable default architecture-tuned while preserving
  ANTISEQUENCE's library-safe baseline: distributed x86_64 binaries target
  x86-64-v3/AVX2, aarch64 artifacts use fixed platform targets, and local
  repository builds use target-cpu=native.

• Add exact target-feature CPUID/XGETBV compatibility checks, Linux ELF loader
  ISA notes, --version --verbose build provenance, and build/SIMD provenance
  in summary schema 1.13.0. Release CI inspects the packaged cargo-dist binary
  before hosting it.

• Add comprehensive byte-equivalence gates between generic SSE2 and tuned
  AVX2 builds.

• EFGDL 2 document headers, named resources, fixed output sequences, output
  header templates, indexed captures, layout choice/optional/repeat algebra,
  anchor sets, and explicit ambiguity/position policies.

• One to three separate input lanes, ordered shard lists, stdin/stdout,
  interleaved FASTQ, gzip auto-detection, and optional accelerated gzip input.

• Typed RunConfig, RunReport, and SeqprocError APIs plus run, validate,
  and explain CLI subcommands; legacy flag-only invocation remains available
  for one compatibility cycle.

• Corrected SPLiT-seq FILTER/Hamming behavior, normalized duplicate whitelist
  entries, deterministic ambiguity handling, and exhaustive input validation.

• Worker-local statistics, versioned run summaries, proof-gated graph
  optimization, dynamic batch planning, and optimized low-thread execution.

• Reproducible multi-platform binary release automation with explicit CPU
  floors.

Install seqproc 0.1.0

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://github.com/COMBINE-lab/seqproc/releases/download/v0.1.0/seqproc-installer.sh | sh

Download seqproc 0.1.0