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A baseline for multigraph square counts with GRAPE.ipynb
A baseline for multigraph square counts with GRAPE.ipynb
 
 
Approximated k-hops Jaccard with GRAPE & HyperLogLog.ipynb
Approximated k-hops Jaccard with GRAPE & HyperLogLog.ipynb
 
 
BM25_weighted_pretrained_BERT_based_textual_embedding_using_GRAPE.ipynb
BM25_weighted_pretrained_BERT_based_textual_embedding_using_GRAPE.ipynb
 
 
Billion-scale 2-approximated vertex cover with GRAPE.ipynb
Billion-scale 2-approximated vertex cover with GRAPE.ipynb
 
 
Billion-scale attributed isomorphic nodes with GRAPE.ipynb
Billion-scale attributed isomorphic nodes with GRAPE.ipynb
 
 
Billion-scale connected components with GRAPE.ipynb
Billion-scale connected components with GRAPE.ipynb
 
 
Billion-scale random spanning tree with GRAPE.ipynb
Billion-scale random spanning tree with GRAPE.ipynb
 
 
Billion-scale squares on multigraphs with GRAPE.ipynb
Billion-scale squares on multigraphs with GRAPE.ipynb
 
 
Billion-scale triangles on multigraphs with GRAPE.ipynb
Billion-scale triangles on multigraphs with GRAPE.ipynb
 
 
Comparing DeepWalk and Node2Vec running on exact and approximated random walks.ipynb
Comparing DeepWalk and Node2Vec running on exact and approximated random walks.ipynb
 
 
Create extensive knowledge graph reports using GRAPE.ipynb
Create extensive knowledge graph reports using GRAPE.ipynb
 
 
Directed English Wikipedia Animation using Second order LINE.ipynb
Directed English Wikipedia Animation using Second order LINE.ipynb
 
 
Edge Predictions on STRING Homo Sapiens using a Perceptron.ipynb
Edge Predictions on STRING Homo Sapiens using a Perceptron.ipynb
 
 
Efficient Betweenness Centrality with GRAPE.ipynb
Efficient Betweenness Centrality with GRAPE.ipynb
 
 
Efficient Stress Centrality with GRAPE.ipynb
Efficient Stress Centrality with GRAPE.ipynb
 
 
Efficient Weighted and Unweighted Closeness Centrality with GRAPE.ipynb
Efficient Weighted and Unweighted Closeness Centrality with GRAPE.ipynb
 
 
Efficient Weighted and Unweighted Harmonic Centrality with GRAPE.ipynb
Efficient Weighted and Unweighted Harmonic Centrality with GRAPE.ipynb
 
 
Ensmallen_Automatic_Graph_Retieval_KGOBO.ipynb
Ensmallen_Automatic_Graph_Retieval_KGOBO.ipynb
 
 
Ensmallen_Automatic_Graph_Retrieval_STRING.ipynb
Ensmallen_Automatic_Graph_Retrieval_STRING.ipynb
 
 
Ensmallen_Automatic_graph_retrieval_utilities.ipynb
Ensmallen_Automatic_graph_retrieval_utilities.ipynb
 
 
Exact billion-scale graph diameter with GRAPE.ipynb
Exact billion-scale graph diameter with GRAPE.ipynb
 
 
First_and_Second_order_random_walks.ipynb
First_and_Second_order_random_walks.ipynb
 
 
Game of Thrones temporal predictions.ipynb
Game of Thrones temporal predictions.ipynb
 
 
Generating lattices with GRAPE.ipynb
Generating lattices with GRAPE.ipynb
 
 
Graph densification using Wikipedia.ipynb
Graph densification using Wikipedia.ipynb
 
 
Graph set algebra.ipynb
Graph set algebra.ipynb
 
 
Graph_generation.ipynb
Graph_generation.ipynb
 
 
Graph_holdouts_using_GRAPE.ipynb
Graph_holdouts_using_GRAPE.ipynb
 
 
High_performance_graph_algorithms.ipynb
High_performance_graph_algorithms.ipynb
 
 
HyperBall-based approximated Harmonic and Closeness with GRAPE.ipynb
HyperBall-based approximated Harmonic and Closeness with GRAPE.ipynb
 
 
KGCOVID19 Animation.ipynb
KGCOVID19 Animation.ipynb
 
 
KGMicrobe Animation using DeepWalk and Walklets GloVe.ipynb
KGMicrobe Animation using DeepWalk and Walklets GloVe.ipynb
 
 
Link prediction models using subgraph sketching using GRAPE.ipynb
Link prediction models using subgraph sketching using GRAPE.ipynb
 
 
Loading_a_Graph_in_Ensmallen.ipynb
Loading_a_Graph_in_Ensmallen.ipynb
 
 
Method_recommender_system.ipynb
Method_recommender_system.ipynb
 
 
Multi-modal GCN for edge prediction.ipynb
Multi-modal GCN for edge prediction.ipynb
 
 
Multiple CiteSeer visualizations.ipynb
Multiple CiteSeer visualizations.ipynb
 
 
Multiple Cora visualizations.ipynb
Multiple Cora visualizations.ipynb
 
 
Multiple Human Phenotype Ontology visualizations.ipynb
Multiple Human Phenotype Ontology visualizations.ipynb
 
 
Multiple Pubmed Diabetes visualizations.ipynb
Multiple Pubmed Diabetes visualizations.ipynb
 
 
Multiple Species Tree visualizations.ipynb
Multiple Species Tree visualizations.ipynb
 
 
NPKG Animation.ipynb
NPKG Animation.ipynb
 
 
PharMeBINet Animation.ipynb
PharMeBINet Animation.ipynb
 
 
README.md
README.md
 
 
STRING Homo Sapiens - Animation of TSNE decomposition of first-order LINE.ipynb
STRING Homo Sapiens - Animation of TSNE decomposition of first-order LINE.ipynb
 
 
The Everything Bagel GNN.ipynb
The Everything Bagel GNN.ipynb
 
 
TransE_to_embed_Species_Tree.ipynb
TransE_to_embed_Species_Tree.ipynb
 
 
Tutorial Pandas.ipynb
Tutorial Pandas.ipynb
 
 
Tutorials generator.ipynb
Tutorials generator.ipynb
 
 
Use graph retrieval to get Bioregistry coverage.ipynb
Use graph retrieval to get Bioregistry coverage.ipynb
 
 
Using HPC SLURM in the GRAPE evaluation pipelines.ipynb
Using HPC SLURM in the GRAPE evaluation pipelines.ipynb
 
 
Using degree-normalization in random-walk-based embedding models.ipynb
Using degree-normalization in random-walk-based embedding models.ipynb
 
 
Using the edge prediction pipeline.ipynb
Using the edge prediction pipeline.ipynb
 
 
Using the node-label prediction pipeline.ipynb
Using the node-label prediction pipeline.ipynb
 
 
Using_BoostNE_to_embed_Cora.ipynb
Using_BoostNE_to_embed_Cora.ipynb
 
 
Using_DeepWalk_CBOW_to_embed_Cora.ipynb
Using_DeepWalk_CBOW_to_embed_Cora.ipynb
 
 
Using_DeepWalk_GloVe_to_embed_Cora.ipynb
Using_DeepWalk_GloVe_to_embed_Cora.ipynb
 
 
Using_DeepWalk_SkipGram_to_embed_Cora.ipynb
Using_DeepWalk_SkipGram_to_embed_Cora.ipynb
 
 
Using_First-order_LINE_to_embed_Cora.ipynb
Using_First-order_LINE_to_embed_Cora.ipynb
 
 
Using_GLEE_to_embed_Cora.ipynb
Using_GLEE_to_embed_Cora.ipynb
 
 
Using_GraRep_to_embed_Cora.ipynb
Using_GraRep_to_embed_Cora.ipynb
 
 
Using_HOPE_to_embed_Cora.ipynb
Using_HOPE_to_embed_Cora.ipynb
 
 
Using_Laplacian_Eigenmaps_to_embed_Cora.ipynb
Using_Laplacian_Eigenmaps_to_embed_Cora.ipynb
 
 
Using_NMFADMM_to_embed_Cora.ipynb
Using_NMFADMM_to_embed_Cora.ipynb
 
 
Using_NetMF_to_embed_Cora.ipynb
Using_NetMF_to_embed_Cora.ipynb
 
 
Using_Node2Vec_CBOW_to_embed_Cora.ipynb
Using_Node2Vec_CBOW_to_embed_Cora.ipynb
 
 
Using_Node2Vec_GloVe_to_embed_Cora.ipynb
Using_Node2Vec_GloVe_to_embed_Cora.ipynb
 
 
Using_Node2Vec_SkipGram_to_embed_Cora.ipynb
Using_Node2Vec_SkipGram_to_embed_Cora.ipynb
 
 
Using_NodeSketch_to_embed_Cora.ipynb
Using_NodeSketch_to_embed_Cora.ipynb
 
 
Using_RandNE_to_embed_Cora.ipynb
Using_RandNE_to_embed_Cora.ipynb
 
 
Using_Role2Vec_to_embed_Cora.ipynb
Using_Role2Vec_to_embed_Cora.ipynb
 
 
Using_Second-order_LINE_to_embed_Cora.ipynb
Using_Second-order_LINE_to_embed_Cora.ipynb
 
 
Using_SocioDim_to_embed_Cora.ipynb
Using_SocioDim_to_embed_Cora.ipynb
 
 
Using_Unstructured_to_embed_Cora.ipynb
Using_Unstructured_to_embed_Cora.ipynb
 
 
Using_Walklets_CBOW_to_embed_Cora.ipynb
Using_Walklets_CBOW_to_embed_Cora.ipynb
 
 
Using_Walklets_GloVe_to_embed_Cora.ipynb
Using_Walklets_GloVe_to_embed_Cora.ipynb
 
 
Using_Walklets_SkipGram_to_embed_Cora.ipynb
Using_Walklets_SkipGram_to_embed_Cora.ipynb
 
 

README.md

Tutorials

Within this directory you may find tutorials relative to the GRAPE library main submodules, Ensmallen and Embiggen. All the tutorials have all dependencies self-contained and are ready to be run on COLAB.

Ensmallen tutorials

The currently available tutorials relative to the Ensmallen submodule are:

Embiggen tutorials

The currently available tutorials relative to the Embiggen submodule are:

Tutorials on GRAPE's pipelines

Opening Issues

If you need any new feature, any new tutorial, or if you have anyother issue, do not hesitate opening an issue in the GRAPE repository. We will get back to you as soon as possible to answer your request. If you want to provide a new tutoring example please feel free to fork and create a new pull request add the notebook with the new tutorial. Make sure it has a working COLAB link!