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Allen Institute

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 374 160

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 25 15

Repositories

Showing 10 of 459 repositories
  • neuron-proofreader Public

    NeuronProofreader is a Python library for automated proofreading of split and merge mistakes in neuron reconstructions.

    AllenInstitute/neuron-proofreader’s past year of commit activity
    Python 6 MIT 0 0 0 Updated Jan 13, 2026
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 15 BSD-3-Clause 4 80 5 Updated Jan 12, 2026
  • spots-in-space Public

    spatial transcriptomics analysis

    AllenInstitute/spots-in-space’s past year of commit activity
    Python 2 0 13 1 Updated Jan 12, 2026
  • deep_ccf_registration Public

    Arbitrary modality registration to CCFv3 using deep learning

    AllenInstitute/deep_ccf_registration’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 12, 2026
  • aibs-informatics-aws-utils Public

    Library of generic Python AWS utils used by the AIBS Informatics "Marmot" team

    AllenInstitute/aibs-informatics-aws-utils’s past year of commit activity
    Python 1 0 2 0 Updated Jan 12, 2026
  • jem Public

    Repository containing JEM (JSON Electrophysiology Metadata), a web-form for logging metadata during slice electrophysiology experiments.

    AllenInstitute/jem’s past year of commit activity
    HTML 5 4 0 0 Updated Jan 12, 2026
  • ephys-analysis-tools Public

    Code base generating formatted data tables that streamlines data analysis process for ephys production metadata.

    AllenInstitute/ephys-analysis-tools’s past year of commit activity
    Python 0 0 0 0 Updated Jan 12, 2026
  • aind-smartspim-transform-utils Public Forked from AllenNeuralDynamics/aind-smartspim-transform-utils

    Package for transforming points between raw space and CCF space from the SmartSPIM light sheet pipeline

    AllenInstitute/aind-smartspim-transform-utils’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Jan 9, 2026
  • dynamic_routing_analysis Public

    Tools for accessing, processing and presenting data from Dynamic Routing experiments.

    AllenInstitute/dynamic_routing_analysis’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Jan 9, 2026
  • spatial_compare Public

    package for comparing spatial transcriptomics datasets

    AllenInstitute/spatial_compare’s past year of commit activity
    Jupyter Notebook 6 8 10 7 Updated Jan 8, 2026
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