The overall goal here is to simplify the code which is currently split across too many individual repos in this organization. Most stuff from PeleMP and PeleRad will be pulled into PelePhysics, with the test cases going to their respective codes (C or LMeX).

• Move Filter Utility from PeleC to PelePhysics/Utility - @baperry2 PR Filter Utility #445
• Add AMReX and Sundials Submodules to PelePhysics/Submodules - @baperry2 PR Add amrex and sundials as submodules of PelePhysics #451
• Move PeleMP Utils to PelePhysics/Support - @marchdf PR Add the Util folder from PeleMP #443
• Move PeleMP Source to PelePhysics/Source - @marchdf PR Move PeleMP Source files to PelePhysics #448
• Move PeleMP Docs to PelePhysics/Docs - @marchdf PR Move PeleMP docs into PelePhysics #449
• Merge Radiation PR for PeleLMeX - PR Adding the radiation module PeleLMeX#313
• Move EOS Transport Reactions Utility to PelePhysics/Source; Support/Mechanism/Models to PelePhysics/Mechanisms @marchdf PR Move a bunch of directories around #452
• Update PeleLMeX with above PelePhysics changes @baperry2 Updates for PelePhysics reorganization. PeleLMeX#325
• Update PeleC with above PelePhysics changes @marchdf PR Update pelephysics submodule PeleC#715

--- Barrier ------

• Move PeleMP Exec cases to PeleC/PeleLMeX
  • PeleLM: deprecated
  • PeleC: move cases @marchdf Add PeleMP cases for soot and spray PeleC#724
  • PeleC: add cases to CI (as relevant): not doing, we already have a spray and soot case
  • PeleLMeX: move cases
  • PeleLMeX: add cases to CI (as relevant)
• Fix the prob_parm passing into Spray stuff @marchdf PR Remove prob parm passing in spray #462 and Remove prob parm passing in spray PeleC#730
• Move PeleRad Source to PelePhysics
  • Move code
  • Harmonize with existing code
• Unify all python scripts with one poetry environment
• Archive PeleLM and other no longer used repos

Documentation tasks no longer part of this issue, now broken out into #460