Spack v1.1: Changes for spack-packages update by anton-seaice · Pull Request #192 · ACCESS-NRI/ACCESS-OM3

anton-seaice · 2026-02-20T00:11:22Z

First, see if it still builds after spack-packages update this week

🚀 The latest prerelease access-om3/pr192-4 at 682d0e3 is here: #192 (comment) 🚀

github-actions · 2026-02-20T00:23:22Z

🚀 Attempted to deploy access-om3 Prerelease pr192-1 with commit e5de1f0

🖥️ `Gadi` Deployment ❌

anton-seaice · 2026-02-20T00:25:24Z

curl and python have been added as deps, but probably aren't needed:

 -   jsnl4iz  access-om3@latest build_system=bundle platform=linux os=rocky8 target=x86_64_v4
 -   b3lttc5      ^[email protected] cflags='-march=sapphirerapids -mtune=sapphirerapids -unroll' cxxflags='-march=sapphirerapids -mtune=sapphirerapids -unroll' fflags='-march=sapphirerapids -mtune=sapphirerapids -unroll' ~ipo build_system=cmake build_type=Release commit=f2f35ce5915e82a83899b69560d826deab53b668 configurations:=MOM6,MOM6-CICE6,MOM6-CICE6-WW3 generator=make platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
 -   birg66p          ^[email protected] cflags='-march=sapphirerapids -mtune=sapphirerapids -unroll' cxxflags='-march=sapphirerapids -mtune=sapphirerapids -unroll' fflags='-march=sapphirerapids -mtune=sapphirerapids -unroll' +access3~ipo~openmp build_system=cmake build_type=Release commit=6bceb915e232f46a8c84992a3176b98ee0acd8b5 driver=none generator=make io_type=PIO platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
 -   pgswxdt              ^[email protected]+fortran~ipo~logging+mpi~ncint~pnetcdf+shared~timing build_system=cmake build_type=Release generator=make platform=linux os=rocky8 target=x86_64_v4 %c,cxx,[email protected]
 -   5xr4emm          ^[email protected] cflags='-march=sapphirerapids -mtune=sapphirerapids -unroll' cxxflags='-march=sapphirerapids -mtune=sapphirerapids -unroll' fflags='-march=sapphirerapids -mtune=sapphirerapids -unroll' +access3~asymmetric_mem~ipo~openmp build_system=cmake build_type=Release commit=7d90a4b1a574b651da30f23777af2481f4ed8022 generator=make platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
 -   5vtiutf              ^[email protected] cflags='-march=sapphirerapids -mtune=sapphirerapids -unroll' cxxflags='-march=sapphirerapids -mtune=sapphirerapids -unroll' fflags='-march=sapphirerapids -mtune=sapphirerapids -unroll' ~ipo~shared~use_access_fms build_system=cmake build_type=Release commit=cdec99a0d8a8d26dca01ccd93ed47e96829b9cd4 generator=make platform=linux os=rocky8 target=x86_64_v4 %[email protected]
[+]  i36gtb3                  ^[email protected] cflags='-march=sapphirerapids -mtune=sapphirerapids -unroll' cxxflags='-march=sapphirerapids -mtune=sapphirerapids -unroll' fflags='-march=sapphirerapids -mtune=sapphirerapids -unroll' ~ipo~shared build_system=cmake build_type=RelWithDebInfo commit=bfbf7f87244bb42db53cd304ddfead567e990312 generator=make precision=2 platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
 -   sl2l7yb              ^[email protected] cppflags='-DMAXFIELDMETHODS_=600' ~gfs_phys+internal_file_nml~ipo+large_file~openmp~pic~portable_kinds~quad_precision~shared~yaml build_system=cmake build_type=Release constants=GFDL generator=make precision:=32,64 platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
 -   efofs4t              ^[email protected]~doc+pic+shared build_system=autotools platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
 -   xh24mpz          ^[email protected]+access3~ipo~openmp build_system=cmake build_type=Release commit=5ccdad475003c711ccb660039847759cc952519f generator=make platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
 -   rpvm2el          ^[email protected] cflags='-march=sapphirerapids -mtune=sapphirerapids -unroll' cxxflags='-march=sapphirerapids -mtune=sapphirerapids -unroll' fflags='-march=sapphirerapids -mtune=sapphirerapids -unroll' ~ipo~openmp build_system=cmake build_type=Release commit=f2f35ce5915e82a83899b69560d826deab53b668 generator=make platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
[+]  cjqb6hb              ^[email protected] build_system=autotools platform=linux os=rocky8 target=x86_64_v4 %[email protected]
[e]  c6epq3u          ^[email protected]~doc+ncurses+ownlibs~qtgui build_system=generic build_type=Release platform=linux os=rocky8 target=x86_64
[+]  vzuctxx          ^[email protected] build_system=generic platform=linux os=rocky8 target=x86_64_v4
 -   azgmctg          ^[email protected] cflags='-march=sapphirerapids -mtune=sapphirerapids -unroll' cxxflags='-march=sapphirerapids -mtune=sapphirerapids -unroll' fflags='-march=sapphirerapids -mtune=sapphirerapids -unroll' ~debug~external-lapack+external-parallelio+mpi+netcdf+openmp~pnetcdf~python+shared~xerces build_system=makefile esmf_comm=auto esmf_os=auto esmf_pio=auto patches:=f63d405 snapshot=none platform=linux os=rocky8 target=x86_64_v4 %c,cxx,[email protected]
 -   2u5fw3q              ^[email protected]+blosc~byterange~dap~fsync~hdf4~ipo~jna~logging+mpi~nczarr_zip+optimize~parallel-netcdf+pic+shared+szip+zstd build_system=cmake build_type=RelWithDebInfo generator=make patches:=0161eb8,1369f80 platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
[+]  g2qxo4t                  ^[email protected]~debug~pic+shared build_system=generic platform=linux os=rocky8 target=x86_64_v4 %[email protected]
[+]  ze2ixwo                      ^[email protected] build_system=autotools platform=linux os=rocky8 target=x86_64_v4 %[email protected]
[+]  4rnnm5e                  ^[email protected]+avx2~ipo build_system=cmake build_type=Release generator=make platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
[+]  cd6h3sz                      ^[email protected]+pic build_system=makefile libs:=shared,static platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
[+]  zyrxlf5                      ^[email protected]~ipo+pic+shared build_system=cmake build_type=Release generator=make platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
 -   ttumisr                  ^[email protected]~gssapi~ldap~libidn2~librtmp~libssh~libssh2+nghttp2 build_system=autotools libs:=shared,static tls:=mbedtls platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
[+]  2qcublm                      ^[email protected]~ipo+pic build_system=cmake build_type=Release generator=make libs:=static platform=linux os=rocky8 target=x86_64_v4 %[email protected]
[+]  n5oluxz                      ^[email protected] build_system=autotools platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
[+]  mh3lgss                  ^[email protected]~cxx~fortran+hl~ipo~java~map+mpi+shared~subfiling~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make platform=linux os=rocky8 target=x86_64_v4 %[email protected]
[+]  u2y7r2f                  ^[email protected]~ipo+shared build_system=cmake build_type=Release generator=make platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
[+]  lozrpmr                  ^[email protected]+sigsegv build_system=autotools platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
[+]  3e4v4vv                      ^[email protected] build_system=autotools platform=linux os=rocky8 target=x86_64_v4 %[email protected]
[+]  2yvoqg2                  ^[email protected]+compat+new_strategies+opt+pic+shared build_system=autotools platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
[+]  hvbffm6                  ^[email protected]+programs build_system=makefile compression:=none libs:=shared,static platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
 -   bektcjp              ^[email protected]+libyaml build_system=python_pip platform=linux os=rocky8 target=x86_64_v4
[+]  njd73oe                  ^[email protected] build_system=autotools platform=linux os=rocky8 target=x86_64_v4 %[email protected]
 -   z73qzea                  ^[email protected] build_system=python_pip platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
 -   m26pk5c                  ^[email protected] build_system=generic platform=linux os=rocky8 target=x86_64_v4
 -   dsapx43                  ^[email protected] build_system=generic platform=linux os=rocky8 target=x86_64_v4
 -   dmyosjx                  ^[email protected] build_system=generic platform=linux os=rocky8 target=x86_64_v4
 -   2y4wlvx                  ^[email protected] build_system=generic platform=linux os=rocky8 target=x86_64_v4
 -   ssc72zy              ^[email protected]+bz2+ctypes+dbm~debug~freethreading+libxml2+lzma~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3~ssl~static~tests~tkinter+uuid+zlib+zstd build_system=generic platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
[+]  2o3fvbr                  ^[email protected]+libbsd build_system=autotools platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
[+]  i4vu2ts                      ^[email protected] build_system=autotools platform=linux os=rocky8 target=x86_64_v4 %[email protected]
[+]  bxdcxyt                          ^[email protected] build_system=autotools platform=linux os=rocky8 target=x86_64_v4 %[email protected]
[+]  5xcw44t                  ^[email protected] build_system=autotools platform=linux os=rocky8 target=x86_64_v4 %[email protected]
 -   v6ut2mg                  ^[email protected]+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
[+]  xo6tv7l                      ^[email protected] build_system=autotools libs:=shared,static platform=linux os=rocky8 target=x86_64_v4 %[email protected]
[+]  tg36ti3                      ^[email protected]+pic~python+shared build_system=autotools platform=linux os=rocky8 target=x86_64_v4 %[email protected]
[+]  wvv23m6                      ^[email protected] build_system=autotools zip=pigz platform=linux os=rocky8 target=x86_64_v4 %[email protected]
[+]  qceysts                          ^[email protected] build_system=makefile platform=linux os=rocky8 target=x86_64_v4 %[email protected]
[+]  gly2jhd                  ^[email protected] build_system=autotools platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
[+]  2jwhrjb                  ^[email protected]~symlinks+termlib abi=none build_system=autotools patches:=7a351bc platform=linux os=rocky8 target=x86_64_v4 %c,[email protected]
[+]  2yn6kpk                  ^[email protected] build_system=autotools platform=linux os=rocky8 target=x86_64_v4 %[email protected]
[+]  tfasdxr                  ^[email protected] build_system=autotools patches:=21f0a03 platform=linux os=rocky8 target=x86_64_v4 %[email protected]
[+]  7stnviy                  ^[email protected]+column_metadata+fts+rtree build_system=autotools platform=linux os=rocky8 target=x86_64_v4 %[email protected]
[+]  jpkagxi                  ^[email protected] build_system=autotools platform=linux os=rocky8 target=x86_64_v4 %[email protected]
[+]  b2cng3l                  ^[email protected]~pic build_system=autotools libs:=shared,static platform=linux os=rocky8 target=x86_64_v4 %[email protected]
[e]  vuczjrb          ^[email protected] build_system=autotools platform=linux os=rocky8 target=x86_64
[+]  rg4gweg          ^[email protected]~guile build_system=generic platform=linux os=rocky8 target=x86_64_v4 %[email protected]
[e]  5kpvted          ^[email protected]~amd+envmods~nvidia build_system=generic platform=linux os=rocky8 target=x86_64
[+]  7y7pvof          ^[email protected] build_system=generic platform=linux os=rocky8 target=x86_64_v4
[+]  tulvdhk              ^[email protected] build_system=generic platform=linux os=rocky8 target=x86_64_v4
[e]  a3hfqfe                  ^[email protected]+binutils+bootstrap~graphite+libsanitizer~mold~nvptx~piclibs~profiled~strip build_system=autotools build_type=RelWithDebInfo languages:='c,c++,fortran' platform=linux os=rocky8 target=x86_64
[e]  q3qnxmz          ^[email protected]+atomics~cuda~cxx~cxx_exceptions~debug+fortran~gpfs~internal-hwloc~internal-libevent~internal-pmix~ipv6~java~lustre~memchecker~openshmem~orterunprefix~rocm+romio+rsh~static~two_level_namespace+vt+wrapper-rpath build_system=autotools fabrics:=none romio-filesystem:=none schedulers:=none platform=linux os=rocky8 target=x86_64

Avoid that by using netcdf-c 4.9.3:

https://github.com/spack/spack-packages/blob/0cc19bcc58ab5439890b05cdb86d157ec22e5a3f/repos/spack_repo/builtin/packages/netcdf_c/package.py#L209-L212

github-actions · 2026-02-20T01:12:34Z

🚀 Attempted to deploy access-om3 Prerelease pr192-2 with commit c86546e

🖥️ `Gadi` Deployment ❌

anton-seaice · 2026-02-20T02:06:06Z

this error is strange:

  >> 221    /scratch/tm70/***/tmp/spack-stage/spack-stage-parallelio-2.6.2-
            55aoyyfbtupnmdpm5o6csqa3v7kfrwgj/spack-src/src/clib/pio_nc.c:2433:5
            6: error: use of undeclared identifier '_FillValue'
     222     2433 |                     ierr = nc_put_att(file->fh, varid, _Fil
            lValue, xtype, 1, fill_valuep);
     223          |

_FillValue should be in netcdf.h from netcdf-c, so ill bump to a newer parallelio version in case of interelated depedency versions.

github-actions · 2026-02-20T03:06:47Z

🚀 Attempted to deploy access-om3 Prerelease pr192-3 with commit 682d0e3

🖥️ `Gadi` Deployment ✔️

Usage Instructions

access-om3, defined in spack.yaml, will be deployed to Gadi as:

2025.08.001 as a Release (when merged).
pr192-3 as a Prerelease (during this PR).

This Prerelease is accessible on Gadi using:

module use /g/data/vk83/prerelease/modules
module load access-om3/pr192-3

When using the above modules, the binaries shall be on your $PATH.

For advanced users, this Prerelease is also accessible on Gadi via /g/data/vk83/prerelease/apps/spack/1.1/spack in the access-om3-pr192-3 environment.
Due to inode-saving measures, one will have to manually untar the environment metadata before environment activation with tar -xf .spack-env .spack-env.tar. It will require one to have write privileges.

Configuration Information

This Prerelease is deployed using:

access-nri/spack on branch 1.1
spack/spack-packages version 383e969358c951abe17623696083e6f862c4488e
access-nri/access-spack-packages version 2026.02.002
access-nri/spack-config version 2026.02.003

If the above was not what was expected, commit changes to config/versions.json in this PR, or propose changes to build-cds config/settings.json.

github-actions · 2026-02-25T02:33:02Z

🚀 Attempted to deploy access-om3 Prerelease pr192-4 with commit 682d0e3

🖥️ `Gadi` Deployment ✔️

Usage Instructions

access-om3, defined in spack.yaml, will be deployed to Gadi as:

2025.08.001 as a Release (when merged).
pr192-4 as a Prerelease (during this PR).

This Prerelease is accessible on Gadi using:

module use /g/data/vk83/prerelease/modules
module load access-om3/pr192-4

When using the above modules, the binaries shall be on your $PATH.

For advanced users, this Prerelease is also accessible on Gadi via /g/data/vk83/prerelease/apps/spack/1.1/spack in the access-om3-pr192-4 environment.
Due to inode-saving measures, one will have to manually untar the environment metadata before environment activation with tar -xf .spack-env .spack-env.tar. It will require one to have write privileges.

Configuration Information

This Prerelease is deployed using:

access-nri/spack on branch 1.1
spack/spack-packages version 383e969358c951abe17623696083e6f862c4488e
access-nri/access-spack-packages version 2026.02.002
access-nri/spack-config version 2026.02.003

If the above was not what was expected, commit changes to config/versions.json in this PR, or propose changes to build-cds config/settings.json.

Update ci.yml

c8cae3d

anton-seaice self-assigned this Feb 20, 2026

anton-seaice added 2 commits February 20, 2026 11:12

Update ci.yml

152cb11

Update ci.yml

e5de1f0

anton-seaice had a problem deploying to Gadi Prerelease February 20, 2026 00:17 — with GitHub Actions Failure

[email protected] to avoid adding curl depdency

c86546e

anton-seaice had a problem deploying to Gadi Prerelease February 20, 2026 00:28 — with GitHub Actions Failure

parallelio 2.6.8

682d0e3

anton-seaice temporarily deployed to Gadi Prerelease February 20, 2026 02:08 — with GitHub Actions Inactive

anton-seaice changed the title ~~infra update v8 for spack 1.1 testing~~ Spack v1.1: Changes for spack-packages update Feb 23, 2026

anton-seaice mentioned this pull request Feb 24, 2026

Infra Update v8: spack v1 Support #163

Merged

4 tasks

anton-seaice marked this pull request as ready for review February 25, 2026 02:22

anton-seaice requested a review from a team as a code owner February 25, 2026 02:22

Update ci.yml

58f0ee4

anton-seaice merged commit b8fe682 into infra-update-v8 Feb 25, 2026

anton-seaice deleted the infra-update-v8-repro_test branch February 25, 2026 02:24

anton-seaice mentioned this pull request Feb 27, 2026

build-ci v3: Update Infra For spack v1 ACCESS-NRI/WW3#8

Merged

4 tasks

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Spack v1.1: Changes for spack-packages update#192

Spack v1.1: Changes for spack-packages update#192
anton-seaice merged 6 commits intoinfra-update-v8from
infra-update-v8-repro_test

anton-seaice commented Feb 20, 2026 •

edited by github-actions bot

Loading

Uh oh!

github-actions bot commented Feb 20, 2026

Uh oh!

anton-seaice commented Feb 20, 2026

Uh oh!

github-actions bot commented Feb 20, 2026

Uh oh!

anton-seaice commented Feb 20, 2026 •

edited

Loading

Uh oh!

github-actions bot commented Feb 20, 2026

Uh oh!

github-actions bot commented Feb 25, 2026

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

1 participant

Conversation

anton-seaice commented Feb 20, 2026 • edited by github-actions bot Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

github-actions bot commented Feb 20, 2026

🖥️ Gadi Deployment ❌

Uh oh!

anton-seaice commented Feb 20, 2026

Uh oh!

github-actions bot commented Feb 20, 2026

🖥️ Gadi Deployment ❌

Uh oh!

anton-seaice commented Feb 20, 2026 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

github-actions bot commented Feb 20, 2026

🖥️ Gadi Deployment ✔️

Uh oh!

github-actions bot commented Feb 25, 2026

🖥️ Gadi Deployment ✔️

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

1 participant

anton-seaice commented Feb 20, 2026 •

edited by github-actions bot

Loading

🖥️ `Gadi` Deployment ❌

🖥️ `Gadi` Deployment ❌

anton-seaice commented Feb 20, 2026 •

edited

Loading

🖥️ `Gadi` Deployment ✔️

🖥️ `Gadi` Deployment ✔️