v4.2 [Jul 15, 2014]
- Ability to change genotype calls for individuals or groups of samples using a lasso
- Simplified one-click export of summary calls text file with intensities for performing CNV analysis with data generated using the Axiom® Genotyping Solution. CNV analysis can be completed in third party software such as Nexus Copy Number™ Software from BioDiscovery or PennCNV, a free software tool for copy number variation (CNV) detection from SNP genotyping arrays.
v4.1 [Mar 31, 2011]
1. Addresses a defect for the SNP Array 6.0 LOH Calling Algorithm: The computation of LOH values for some markers has changed possibly resulting in lengthening, shortening or disappearance of previously reported LOH regions, or the appearance of new regions. This generally affects regions where the marker response was noisy and the region‟s length was close to the threshold for the “LOH minimum physical size threshold”.
2. The restriction that all Axiom CEL files in an analysis batch have the same reagent version has been relaxed to a warning message. Before processing a batch of CEL files the software indicates were processed with different reagent versions, the user should verify that they were all processed with the same reagent kit.
3. GTC now supports Windows 7 service pack 1 (both 32-bit and 64-bit)
4. The GTC software now installs and utilizes a local Java runtime package (JRE 1.6 update 25) to support the GTC Browser.
New and updated library files and annotation files are available and are REQUIRED for Genotyping Console to analyze Axiom™ arrays and other arrays. You can download them through the GTC application or copy the Files in the “GTC_4.1_Analysis_Files.zip” folder (which can be downloaded from the Affymetrix Product Page).
SNP Genotyping Analysis is a highly accurate genotyping analysis software.
