GCC BOSC 2018 has ended

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GCC BOSC 2018

The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018. There will be two days of training, a two+ day meeting, and four days of intense collaboration. The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events. GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

Videos: BOSC, GCC; and Program PDF
Registration, lodging and childcare information
Sponsorships, BoFs, Frequently Asked Questions (FAQ),
#GCCBOSC / Chat

3:00pm PDT

Conference desk open PAB Atrium

8:00am PDT

Conference desk open PAB Atrium Training Day 1 - Galaxy Performing Arts Building

9:00am PDT

Galaxy 101 - A gentle introduction to using Galaxy PAB 104Bérénice Batut • Joachim Wolff Intro to Galaxy Administration 1 PAB 320The Other Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech

11:30am PDT

Lunch Reed Commons Cafe

12:30pm PDT

Intro to Galaxy Administration 2 PAB 320The Other Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech RNA-Seq Analysis with Galaxy PAB 104Anton Nekrutenko

3:00pm PDT

Break Reed Commons Cafe

3:30pm PDT

Galaxy For Proteogenomics ! PAB 104Timothy J. Griffin • Pratik Jagtap • James Johnson • Praveen Kumar • Subina Mehta Intro to Galaxy Administration 3 PAB 320The Other Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech

6:00pm PDT

Dinner on your own TBA

7:30pm PDT

Bioinformatics Training and Education with the Galaxy Training Network PAB 320Bérénice Batut

8:00am PDT

Training Day 2 - All topics Reed College Campus Conference desk open PAB Atrium

9:00am PDT

Community built analyses that run everywhere with bcbio PAB 332Brad Chapman • Radhika S. Khetani • Lorena Pantano Rubino Conda and Containers PAB 320John Chilton • Bjorn Gruning • Martin Čech Data Carpentry Genomics Workshop: Data Organization and Automation with Shell I PAB 131Tracy K. Teal Handling integrated biological data using Python (or R) and InterMine PAB 104Daniela Butano • Leyla Ruzicka • Yo Yehudi WDL: the Workflow Description Language Vollum LoungeGeraldine Van der Auwera • Jeff Gentry • Chris Llanwarne

11:30am PDT

Lunch Reed Commons Cafe

12:30pm PDT

Data Carpentry Genomics Workshop: Data Organization and Automation with Shell II PAB 131Tracy K. Teal Galaxy Interactive Environments PAB 332Bjorn Gruning Introduction to Common Workflow Language PAB 320Michael R. Crusoe • Kenzo-Hugo Hillion • Hervé Ménager Practical use of the Galaxy API command line tools Vollum LoungeDannon Baker • Marius van den Beek • Nicola Soranzo Setting up for success: Everything you need to know when planning for an RNA-seq analysis I PAB 104Radhika S. Khetani • Meeta Mistry • Mary Piper

3:00pm PDT

Break PAB Atrium

3:30pm PDT

Command line workflow management systems: Snakemake and Nextflow Vollum LoungeJohannes Köster • Paolo Di Tommaso Data Carpentry Genomics Workshop: Data Organization and Automation with Shell III PAB 131Tracy K. Teal Galaxy Architecture PAB 320John Chilton • Nate Coraor GATK4: What's new and how to run it PAB 332Geraldine Van der Auwera • Kate Noblett Setting up for success: Everything you need to know when planning for an RNA-seq analysis II PAB 104Radhika S. Khetani • Meeta Mistry • Mary Piper

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Southeast Reed College Place, Portland, Oregon, United States

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