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ORCIDYang Tan 0001
Person information
- affiliation: East China University of Science and Technology, School of Information Science and Engineering, Shanghai, China
Other persons with the same name
- Yang Tan — disambiguation page
- Yang Tan 0002
![[0000-0003-1015-5279]](https://dblp.uni-trier.de/img/orcid-mark.12x12.png "0000-0003-1015-5279")
— CertiK, Shenzhen, China (and 2 more) - Yang Tan 0003 — Beijing Institute of Technology, School of Medical Technology, Key Laboratory of Brain Health Intelligent Evaluation and Intervention, China (and 1 more)
- Yang Tan 0004 — Tsinghua University, Tsinghua-Berkeley Shenzhen Institute (TBSI), China
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2020 – today
- 2025
[j7]Yang Tan, Ruilin Wang, Banghao Wu, Liang Hong, Bingxin Zhou:
From high-throughput evaluation to wet-lab studies: advancing mutation effect prediction with a retrieval-enhanced model. Bioinform. 41(Supplement_1): i401-i409 (2025)- [j6]Wenrui Gou, Yang Tan, Chen Liu, Mingchen Li, Guisheng Fan, Huiqun Yu:
Graph with Residue-Based Cross-Modal Framework Enhances Cell Function-Related Protein Properties Prediction. J. Chem. Inf. Model. 65(14): 7493-7506 (2025) - [j5]Wenhui Ge, Yang Tan, Huiqun Yu, Guisheng Fan, Mingchen Li:
SRPM-Sol: A Structure Robust Protein Multimodal Model for Solubility Prediction. IEEE Trans. Comput. Biol. Bioinform. 22(4): 1740-1751 (2025) - [c5]Song Li, Yang Tan, Song Ke, Liang Hong, Bingxin Zhou:
Immunogenicity Prediction with Dual Attention Enables Vaccine Target Selection. ICLR 2025 - [i14]Yang Tan, Chen Liu, Jingyuan Gao, Banghao Wu, Mingchen Li, Ruilin Wang, Lingrong Zhang, Huiqun Yu, Guisheng Fan, Liang Hong, Bingxin Zhou:
VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning. CoRR abs/2503.15438 (2025) - [i13]Yang Tan, Wenrui Gou, Bozitao Zhong, Liang Hong, Huiqun Yu, Bingxin Zhou:
VenusX: Unlocking Fine-Grained Functional Understanding of Proteins. CoRR abs/2505.11812 (2025) - [i12]Chen Liu, Mingchen Li, Yang Tan, Wenrui Gou, Guisheng Fan, Bingxin Zhou:
Sequence-Only Prediction of Binding Affinity Changes: A Robust and Interpretable Model for Antibody Engineering. CoRR abs/2505.20301 (2025) - [i11]Zhiyu Wang, Bingxin Zhou, Jing Wang, Yang Tan, Weishu Zhao, Pietro Liò, Liang Hong:
Fast and Interpretable Protein Substructure Alignment via Optimal Transport. CoRR abs/2510.11752 (2025) - 2024
- [j4]Yang Tan, Zhixing Zhang, Mingchen Li, Fei Pan, Hao Duan, Zijie Huang, Hua Deng, Zhuohang Yu, Chen Yang, Guoyang Shen, Peng Qi, Chengyuan Yue, Yuxian Liu, Liang Hong, Huiqun Yu, Guisheng Fan, Yun Tang:
MedChatZH: A tuning LLM for traditional Chinese medicine consultations. Comput. Biol. Medicine 172: 108290 (2024) - [j3]Yang Tan, Mingchen Li, Ziyi Zhou, Pan Tan, Huiqun Yu, Guisheng Fan, Liang Hong:
PETA: evaluating the impact of protein transfer learning with sub-word tokenization on downstream applications. J. Cheminformatics 16(1): 92 (2024) - [j2]Bingxin Zhou, Lirong Zheng, Banghao Wu, Yang Tan, Outongyi Lv, Kai Yi, Guisheng Fan, Liang Hong:
Protein Engineering with Lightweight Graph Denoising Neural Networks. J. Chem. Inf. Model. 64(9): 3650-3661 (2024) - [j1]Yang Tan, Mingchen Li, Bingxin Zhou, Bozitao Zhong, Lirong Zheng, Pan Tan, Ziyi Zhou, Huiqun Yu, Guisheng Fan, Liang Hong:
Simple, Efficient, and Scalable Structure-Aware Adapter Boosts Protein Language Models. J. Chem. Inf. Model. 64(16): 6338-6349 (2024) - [c4]Yutong Hu, Yang Tan, Andi Han, Lirong Zheng, Liang Hong, Bingxin Zhou:
Secondary Structure-Guided Novel Protein Sequence Generation with Latent Graph Diffusion. BIBM 2024: 31-41 - [c3]Yang Tan, Jia Zheng, Liang Hong, Bingxin Zhou:
PROTSOLM: Protein Solubility Prediction with Multi-modal Features. BIBM 2024: 223-232 - [c2]Yang Tan, Lirong Zheng, Bozitao Zhong, Liang Hong, Bingxin Zhou:
Protein Representation Learning with Sequence Information Embedding: Does it Always Lead to a Better Performance? BIBM 2024: 233-239 - [c1]Mingchen Li, Yang Tan, Xinzhu Ma, Bozitao Zhong, Huiqun Yu, Ziyi Zhou, Wanli Ouyang, Bingxin Zhou, Pan Tan, Liang Hong:
ProSST: Protein Language Modeling with Quantized Structure and Disentangled Attention. NeurIPS 2024 - [i10]Yang Tan, Mingchen Li, Bingxin Zhou, Bozitao Zhong, Lirong Zheng, Pan Tan, Ziyi Zhou, Huiqun Yu, Guisheng Fan, Liang Hong:
Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models. CoRR abs/2404.14850 (2024) - [i9]Yang Tan, Lirong Zheng, Bozitao Zhong, Liang Hong, Bingxin Zhou:
Protein Representation Learning with Sequence Information Embedding: Does it Always Lead to a Better Performance? CoRR abs/2406.19755 (2024) - [i8]Yutong Hu, Yang Tan, Andi Han, Lirong Zheng, Liang Hong, Bingxin Zhou:
Secondary Structure-Guided Novel Protein Sequence Generation with Latent Graph Diffusion. CoRR abs/2407.07443 (2024) - [i7]Yuxuan Wu, Xiao Yi, Yang Tan, Huiqun Yu, Guisheng Fan:
A PLMs based protein retrieval framework. CoRR abs/2407.11548 (2024) - [i6]Song Li, Yang Tan, Song Ke, Liang Hong, Bingxin Zhou:
Immunogenicity Prediction with Dual Attention Enables Vaccine Target Selection. CoRR abs/2410.02647 (2024) - [i5]Wenrui Gou, Wenhui Ge, Yang Tan, Mingchen Li, Guisheng Fan, Huiqun Yu:
CPE-Pro: A Structure-Sensitive Deep Learning Method for Protein Representation and Origin Evaluation. CoRR abs/2410.15592 (2024) - [i4]Yang Tan, Ruilin Wang, Banghao Wu, Liang Hong, Bingxin Zhou:
Retrieval-Enhanced Mutation Mastery: Augmenting Zero-Shot Prediction of Protein Language Model. CoRR abs/2410.21127 (2024) - 2023
- [i3]Yang Tan, Bingxin Zhou, Yuanhong Jiang, Yu Guang Wang, Liang Hong:
Multi-level Protein Representation Learning for Blind Mutational Effect Prediction. CoRR abs/2306.04899 (2023) - [i2]Yang Tan, Mingchen Li, Zijie Huang, Huiqun Yu, Guisheng Fan:
MedChatZH: a Better Medical Adviser Learns from Better Instructions. CoRR abs/2309.01114 (2023) - [i1]Yang Tan, Mingchen Li, Pan Tan, Ziyi Zhou, Huiqun Yu, Guisheng Fan, Liang Hong:
PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream Applications. CoRR abs/2310.17415 (2023)
Coauthor Index
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