default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDBioinformatics, Volume 27
Volume 27, Number 1, January 2011
- Qianchuan He
, Dan-Yu Lin:
A variable selection method for genome-wide association studies. 1-8 - Maria Elena Sana, Maria Iascone, Daniela Marchetti, Jeffrey J. T. Palatini, Marco Galasso, Stefano Volinia:
GAMES identifies and annotates mutations in next-generation sequencing projects. 9-13 - Dong Seon Kim, Yoonsoo Hahn:
Identification of human-specific transcript variants induced by DNA insertions in the human genome. 14-21
- Monzoorul Haque Mohammed, Tarini Shankar Ghosh, Nitin Kumar Singh, Sharmila S. Mande:
SPHINX - an algorithm for taxonomic binning of metagenomic sequences. 22-30 - Yuheng Li, Nicholas Chia, Mario Lauria, Ralf Bundschuh:
A performance enhanced PSI-BLAST based on hybrid alignment. 31-37
- Jaime Huerta-Cepas, Toni Gabaldón:
Assigning duplication events to relative temporal scales in genome-wide studies. 38-45
- R. Dustin Schaeffer, Amanda L. Jonsson, Andrew M. Simms, Valerie Daggett:
Generation of a consensus protein domain dictionary. 46-54 - Chandrajit L. Bajaj, Rezaul Alam Chowdhury, Muhibur Rasheed:
A dynamic data structure for flexible molecular maintenance and informatics. 55-62
- Haimao Zhan, Xin Chen, Shizhong Xu:
A stochastic expectation and maximization algorithm for detecting quantitative trait-associated genes. 63-69 - Johannes M. Freudenberg, Siva Sivaganesan, Mukta Phatak, Kaustubh Shinde, Mario Medvedovic:
Generalized random set framework for functional enrichment analysis using primary genomics datasets. 70-77 - Sunghee Oh, Dongwan D. Kang, Guy N. Brock, George C. Tseng:
Biological impact of missing-value imputation on downstream analyses of gene expression profiles. 78-86 - Vanya Van Belle, Kristiaan Pelckmans, Sabine Van Huffel, Johan A. K. Suykens:
Improved performance on high-dimensional survival data by application of Survival-SVM. 87-94
- Peilin Jia, Siyuan Zheng, Jirong Long, Wei Zheng, Zhongming Zhao:
dmGWAS: dense module searching for genome-wide association studies in protein-protein interaction networks. 95-102
- Nidhal Bouaynaya, Roman Shterenberg, Dan Schonfeld:
Inverse perturbation for optimal intervention in gene regulatory networks. 103-110 - Guy Geva, Roded Sharan:
Identification of protein complexes from co-immunoprecipitation data. 111-117
- Shi Yu, Xinhai Liu, Léon-Charles Tranchevent, Wolfgang Glänzel, Johan A. K. Suykens, Bart De Moor, Yves Moreau:
Optimized data fusion for K-means Laplacian clustering. 118-126
- Gail L. Rosen, Erin R. Reichenberger, Aaron M. Rosenfeld:
NBC: the Naïve Bayes Classification tool webserver for taxonomic classification of metagenomic reads. 127-129
- Timo Lassmann, Yoshihide Hayashizaki, Carsten O. Daub:
SAMStat: monitoring biases in next generation sequencing data. 130-131
- Jean-Christophe Gelly, Alexandre G. de Brevern:
Protein Peeling 3D: new tools for analyzing protein structures. 132-133
- Ryan Abo, Stacey Knight, Alun Thomas, Nicola J. Camp:
Automated construction and testing of multi-locus gene-gene associations. 134-136
- Fernando García-Alcalde, Federico García-López, Joaquín Dopazo, Ana Conesa:
Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data. 137-139 - Laurin A. J. Mueller, Karl G. Kugler, Andreas Dander, Armin Graber, Matthias Dehmer:
QuACN: an R package for analyzing complex biological networks quantitatively. 140-141 - Ronan M. T. Fleming, Ines Thiele:
von Bertalanffy 1.0: a COBRA toolbox extension to thermodynamically constrain metabolic models. 142-143
- Paul Martin, Anne Barton, Stephen Eyre:
ASSIMILATOR: a new tool to inform selection of associated genetic variants for functional studies. 144-146
Volume 27, Number 2, January 2011
- Dong Dong, Xiaojian Shao, Zhaolei Zhang:
Differential effects of chromatin regulators and transcription factors on gene regulation: a nucleosomal perspective. 147-152 - Giuseppe Narzisi, Bud Mishra:
Scoring-and-unfolding trimmed tree assembler: concepts, constructs and comparisons. 153-160 - Vito M. R. Muggeo, Giada Adelfio:
Efficient change point detection for genomic sequences of continuous measurements. 161-166
- Pramila Nuwantha Ariyaratne, Wing-Kin Sung:
PE-Assembler: de novo assembler using short paired-end reads. 167-174 - Ahrim Youn, Richard Simon:
Identifying cancer driver genes in tumor genome sequencing studies. 175-181 - Panagiotis D. Vouzis, Nikolaos V. Sahinidis:
GPU-BLAST: using graphics processors to accelerate protein sequence alignment. 182-188 - Sanchit Misra, Ankit Agrawal, Wei-keng Liao, Alok N. Choudhary:
Anatomy of a hash-based long read sequence mapping algorithm for next generation DNA sequencing. 189-195 - Fabio Gori, Gianluigi Folino, Mike S. M. Jetten, Elena Marchiori:
MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks. 196-203
- Tobias Hamp, Fabian Birzele, Fabian Buchwald, Stefan Kramer:
Improving structure alignment-based prediction of SCOP families using Vorolign Kernels. 204-210 - Stefan E. Seemann, Andreas S. Richter, Tanja Gesell, Rolf Backofen, Jan Gorodkin:
PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences. 211-219
- Gregory Riddick, Hua Song, Susie Ahn, Jennifer Walling, Diego Borges-Rivera, Wei Zhang, Howard A. Fine:
Predicting in vitro drug sensitivity using Random Forests. 220-224 - Hong-Qiang Wang, Lindsey K. Tuominen, Chung-Jui Tsai:
SLIM: a sliding linear model for estimating the proportion of true null hypotheses in datasets with dependence structures. 225-231
- Darong Lai, Xinyi Yang, Gang Wu, Yuanhua Liu, Christine Nardini:
Inference of gene networks - application to Bifidobacterium. 232-237 - Holger Fröhlich, Paurush Praveen, Achim Tresch:
Fast and efficient dynamic nested effects models. 238-244 - Tae-Hwan Kim, Junil Kim, Pat Heslop-Harrison, Kwang-Hyun Cho:
Evolutionary design principles and functional characteristics based on kingdom-specific network motifs. 245-251 - Isabel A. Nepomuceno-Chamorro, Francisco Azuaje, Yvan Devaux, Petr V. Nazarov, Arnaud Muller, Jesús S. Aguilar-Ruiz, Daniel R. Wagner:
Prognostic transcriptional association networks: a new supervised approach based on regression trees. 252-258
- Quoc-Chinh Bui, Sophia Katrenko, Peter M. A. Sloot:
A hybrid approach to extract protein-protein interactions. 259-265
- Qing Yu, Elizabeth M. Ryan, Todd M. Allen, Bruce W. Birren, Matthew R. Henn, Niall J. Lennon:
PriSM: a primer selection and matching tool for amplification and sequencing of viral genomes. 266-267 - Valentina Boeva, Andrei Yu. Zinovyev, Kevin Bleakley, Jean-Philippe Vert, Isabelle Janoueix-Lerosey, Olivier Delattre, Emmanuel Barillot:
Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization. 268-269 - Simon J. van Heeringen, Gert Jan C. Veenstra:
GimmeMotifs: a de novo motif prediction pipeline for ChIP-sequencing experiments. 270-271 - Ryan T. Koehler, Hadar Issac, Nicole Cloonan, Sean M. Grimmond:
The uniqueome: a mappability resource for short-tag sequencing. 272-274
- Paulo C. Carvalho, Juliana S. G. Fischer, Jonas Perales, John R. Yates III, Valmir Carneiro Barbosa, Elias Bareinboim:
Analyzing marginal cases in differential shotgun proteomics. 275-276 - Emese Meglécz, Sylvain Piry, Erick Desmarais, Maxime Galan, André Gilles, Emmanuel Guivier, Nicolas Pech, Jean-François Martin:
SESAME (SEquence Sorter & AMplicon Explorer): genotyping based on high-throughput multiplex amplicon sequencing. 277-278 - Stephanie Kehr, Sebastian Bartschat, Peter F. Stadler, Hakim Tafer:
PLEXY: efficient target prediction for box C/D snoRNAs. 279-280
- Lukas Habegger, Andrea Sboner, Tara A. Gianoulis, Joel S. Rozowsky, Ashish Agarwal, Michael Snyder, Mark Gerstein:
RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries. 281-283
- Nicholas A. Davis, Ahwan Pandey, Brett A. McKinney:
Real-world comparison of CPU and GPU implementations of SNPrank: a network analysis tool for GWAS. 284-285 - Rebecca Rooke, Guojun Yang:
TE Displayer for post-genomic analysis of transposable elements. 286-287
- Matthias Vigelius, Aidan Lane, Bernd Meyer:
Accelerating reaction-diffusion simulations with general-purpose graphics processing units. 288-290
Volume 27, Number 3, February 2011
- Lucian Ilie, Farideh Fazayeli, Silvana Ilie:
HiTEC: accurate error correction in high-throughput sequencing data. 295-302 - Lars Halvor Gidskehaug, Matthew Kent, Ben J. Hayes, Sigbjørn Lien:
Genotype calling and mapping of multisite variants using an Atlantic salmon iSelect SNP array. 303-310 - Haitao Jiang, Binhai Zhu, Daming Zhu:
Algorithms for sorting unsigned linear genomes by the DCJ operations. 311-316
- Peter Menzel, Peter F. Stadler, Jan Gorodkin:
maxAlike: maximum likelihood-based sequence reconstruction with application to improved primer design for unknown sequences. 317-325 - Leonard Apeltsin, John H. Morris, Patricia C. Babbitt, Thomas E. Ferrin:
Improving the quality of protein similarity network clustering algorithms using the network edge weight distribution. 326-333 - Samuel V. Angiuoli, Steven L. Salzberg:
Mugsy: fast multiple alignment of closely related whole genomes. 334-342
- Pascal Benkert, Marco Biasini, Torsten Schwede:
Toward the estimation of the absolute quality of individual protein structure models. 343-350 - Hongbo Zhu, M. Teresa Pisabarro:
MSPocket: an orientation-independent algorithm for the detection of ligand binding pockets. 351-358
- Vinícius Bonato, Veerabhadran Baladandayuthapani, Bradley M. Broom, Erik P. Sulman, Kenneth D. Aldape, Kim-Anh Do:
Bayesian ensemble methods for survival prediction in gene expression data. 359-367 - António dos Anjos, Anders L. B. Møller, Bjarne Kjær Ersbøll, Christine Finnie, Hamid Reza Shahbazkia:
New approach for segmentation and quantification of two-dimensional gel electrophoresis images. 368-375
- Todd A. Gibson, Debra Goldberg:
Improving evolutionary models of protein interaction networks. 376-382 - Xiaojian Shao, Chris Soon Heng Tan, Courtney Voss, Shawn S. C. Li, Naiyang Deng, Gary D. Bader:
A regression framework incorporating quantitative and negative interaction data improves quantitative prediction of PDZ domain-peptide interaction from primary sequence. 383-390 - Yongsoo Kim, Taek-Kyun Kim, Yungu Kim, Jiho Yoo, Sungyong You, Inyoul Y. Lee, George Carlson, Leroy Hood, Seungjin Choi, Daehee Hwang:
Principal network analysis: identification of subnetworks representing major dynamics using gene expression data. 391-398 - Ming Zhou, Xiliang Zheng, Jin Wang, Shaojun Dong:
'Non-destructive' biocomputing security system based on gas-controlled biofuel cell and potentially used for intelligent medical diagnostics. 399-404 - Gábor Iván, Vince Grolmusz:
When the Web meets the cell: using personalized PageRank for analyzing protein interaction networks. 405-407
- Emily Doughty, Attila Kertész-Farkas, Olivier Bodenreider, Gary Thompson, Asa Adadey, Thomas A. Peterson, Maricel G. Kann:
Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature. 408-415
- Vijay Garla, Yong Kong, Sebastian Szpakowski, Michael Krauthammer:
MU2A - reconciling the genome and transcriptome to determine the effects of base substitutions. 416-418 - Philippe Lamy, Carsten Wiuf, Torben F. Ørntoft, Claus L. Andersen:
Rseg - an R package to optimize segmentation of SNP array data. 419-420
- Shao-Ke Lou, Bing Ni, Leung-Yau Lo, Stephen Kwok-Wing Tsui, Ting-Fung Chan, Kwong-Sak Leung:
ABMapper: a suffix array-based tool for multi-location searching and splice-junction mapping. 421-422
- Daniel Aioanei, Marco Brucale, Bruno Samorì:
Open source platform for the execution and analysis of mechanical refolding experiments. 423-425 - Per Larsson, Marcin J. Skwark, Björn Wallner, Arne Elofsson:
Improved predictions by Pcons.net using multiple templates. 426-427
- Xun Lan, Russell Bonneville, Jeff Apostolos, Wangcheng Wu, Victor X. Jin:
W-ChIPeaks: a comprehensive web application tool for processing ChIP-chip and ChIP-seq data. 428-430
- Michael E. Smoot, Keiichiro Ono, Johannes Ruscheinski, Peng-Liang Wang, Trey Ideker:
Cytoscape 2.8: new features for data integration and network visualization. 431-432 - Albert Gevorgyan, Michael E. Bushell, Claudio Avignone-Rossa, Andrzej M. Kierzek:
SurreyFBA: a command line tool and graphics user interface for constraint-based modeling of genome-scale metabolic reaction networks. 433-434
- Miquel Miquel, I. López-Ribera, Miquel Ràmia, Sònia Casillas, Antonio Barbadilla, Carlos M. Vicient:
MASISH: a database for gene expression in maize seeds. 435-436 - Y. Wayne Huang, Adam P. Arkin, John-Marc Chandonia:
WIST: toolkit for rapid, customized LIMS development. 437-438
- Daniel F. Schwarz, Inke R. König, Andreas Ziegler:
On safari to Random Jungle: a fast implementation of Random Forests for high-dimensional data. 439
Volume 27, Number 4, February 2011
- Melissa S. Cline, Rachel Karchin:
Using bioinformatics to predict the functional impact of SNVs. 441-448
- Bernhard Haubold, Floyd A. Reed, Peter Pfaffelhuber:
Alignment-free estimation of nucleotide diversity. 449-455
- Andrew X. Li, Manja Marz, Jing Qin, Christian M. Reidys:
RNA-RNA interaction prediction based on multiple sequence alignments. 456-463 - Kana Shimizu, Koji Tsuda:
SlideSort: all pairs similarity search for short reads. 464-470 - Tak-Ming Chan, Ka-Chun Wong, Kin-Hong Lee, Man Hon Wong, Chi-Kong Lau, Stephen Kwok-Wing Tsui, Kwong-Sak Leung:
Discovering approximate-associated sequence patterns for protein-DNA interactions. 471-478 - Thomas C. Conway, Andrew J. Bromage:
Succinct data structures for assembling large genomes. 479-486
- Teppei Ebina, Hiroyuki Toh, Yutaka Kuroda:
DROP: an SVM domain linker predictor trained with optimal features selected by random forest. 487-494
- Francesco C. Stingo, Marina Vannucci:
Variable selection for discriminant analysis with Markov random field priors for the analysis of microarray data. 495-501 - Zhengpeng Wu, Xi Wang, Xuegong Zhang:
Using non-uniform read distribution models to improve isoform expression inference in RNA-Seq. 502-508 - Sangsoon Woo, Jeffrey T. Leek, John D. Storey:
A computationally efficient modular optimal discovery procedure. 509-515
- Jiahan Li, Kiranmoy Das, Guifang Fu, Runze Li, Rongling Wu:
The Bayesian lasso for genome-wide association studies. 516-523
- Frank-Michael Schleif, T. Riemer, U. Börner, L. Schnapka-Hille, Michael Cross:
Genetic algorithm for shift-uncertainty correction in 1-D NMR-based metabolite identifications and quantifications. 524-533 - Alberto Rezola, Luis F. de Figueiredo, Matthias Brock, Jon Pey, Adam Podhorski, Christoph Wittmann, Stefan Schuster, Alexander Bockmayr, Francisco J. Planes:
Exploring metabolic pathways in genome-scale networks via generating flux modes. 534-540 - Paul A. Jensen, Jason A. Papin:
Functional integration of a metabolic network model and expression data without arbitrary thresholding. 541-547 - Ritwik Layek, Aniruddha Datta, Michael L. Bittner, Edward R. Dougherty:
Cancer therapy design based on pathway logic. 548-555 - Wessel N. van Wieringen, Aad van der Vaart:
Statistical analysis of the cancer cell's molecular entropy using high-throughput data. 556-563
- Hang Xiao, Ying Li, Jiulin Du, Axel Mosig:
Ct3d: tracking microglia motility in 3D using a novel cosegmentation approach. 564-571 - Jürgen Hartler, Martin Trötzmüller, Chandramohan Chitraju, Friedrich Spener, Harald C. Köfeler, Gerhard G. Thallinger:
Lipid Data Analyzer: unattended identification and quantitation of lipids in LC-MS data. 572-577
- Marten Boetzer, Christiaan V. Henkel, Hans J. Jansen, Derek Butler, Walter Pirovano:
Scaffolding pre-assembled contigs using SSPACE. 578-579
- David L. A. Wood, Qinying Xu, John V. Pearson, Nicole Cloonan, Sean M. Grimmond:
X-MATE: a flexible system for mapping short read data. 580-581
- Jose Ignacio Agulleiro Baldo, José-Jesús Fernández:
Fast tomographic reconstruction on multicore computers. 582-583
- Clive G. Bowsher:
Automated analysis of information processing, kinetic independence and modular architecture in biochemical networks using MIDIA. 584-586
- Leonardo Bottolo, Marc Chadeau-Hyam, David I. Hastie, Sarah R. Langley, Enrico Petretto, Laurence Tiret, David Tregouet, Sylvia Richardson:
ESS++: a C++ objected-oriented algorithm for Bayesian stochastic search model exploration. 587-588
- Mikhail Gostev, Julio Fernandez-Banet, Johan Rung, Joern Dietrich, Inga Prokopenko, Samuli Ripatti, Mark I. McCarthy, Alvis Brazma, Maria Krestyaninova:
SAIL - a software system for sample and phenotype availability across biobanks and cohorts. 589-591
- Klaus Peter Schliep:
phangorn: phylogenetic analysis in R. 592-593
Volume 27, Number 5, March 2011
- Alexej Abyzov, Mark Gerstein:
AGE: defining breakpoints of genomic structural variants at single-nucleotide resolution, through optimal alignments with gap excision. 595-603 - Christopher Oldmeadow, Jonathan M. Keith:
Model selection in Bayesian segmentation of multiple DNA alignments. 604-610
- Xiaolin Hao, Rui Jiang, Ting Chen:
Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering. 611-618
- Anna Katharina Dehof, Alexander Rurainski, Quang Bao Anh Bui, Sebastian Böcker, Hans-Peter Lenhof, Andreas Hildebrandt:
Automated bond order assignment as an optimization problem. 619-625 - Zhenjiang Xu, David H. Mathews:
Multilign: an algorithm to predict secondary structures conserved in multiple RNA sequences. 626-632
- Ryung S. Kim, Juan Lin:
Multi-level mixed effects models for bead arrays. 633-640 - Eric Dugat-Bony, Mohieddine Missaoui, Eric Peyretaillade, Corinne Biderre-Petit, Ourdia Bouzid, Christophe Gouinaud, David R. C. Hill, Pierre Peyret:
HiSpOD: probe design for functional DNA microarrays. 641-648 - Xiujie Chen, Jiankai Xu, Bangqing Huang, Jin Li, Xin Wu, Ling Ma, Xiaodong Jia, Xiusen Bian, Fujian Tan, Lei Liu, Sheng Chen, Xia Li:
A sub-pathway-based approach for identifying drug response principal network. 649-654 - Yosef Prat, Menachem Fromer, Nathan Linial, Michal Linial:
Recovering key biological constituents through sparse representation of gene expression. 655-661 - Liyan Gao, Zhide Fang, Kui Zhang, Degui Zhi, Xiangqin Cui:
Length bias correction for RNA-seq data in gene set analyses. 662-669
- Xuexia Wang, Xiaofeng Zhu, Huaizhen Qin, Richard S. Cooper, Warren J. Ewens, Chun Li, Mingyao Li:
Adjustment for local ancestry in genetic association analysis of admixed populations. 670-677 - Vonn Walter, Andrew B. Nobel, Fred A. Wright:
DiNAMIC: a method to identify recurrent DNA copy number aberrations in tumors. 678-685 - Lily Wang, Peilin Jia, Russell D. Wolfinger, Xi Chen, Britney L. Grayson, Thomas M. Aune, Zhongming Zhao:
An efficient hierarchical generalized linear mixed model for pathway analysis of genome-wide association studies. 686-692
- Marco Grzegorczyk, Dirk Husmeier:
Improvements in the reconstruction of time-varying gene regulatory networks: dynamic programming and regularization by information sharing among genes. 693-699 - Hung Xuan Ta, Patrik Koskinen, Liisa Holm:
A novel method for assigning functional linkages to proteins using enhanced phylogenetic trees. 700-706
- Feng Feng, Ana Paula Sales, Thomas B. Kepler:
A Bayesian approach for estimating calibration curves and unknown concentrations in immunoassays. 707-712
- Jonathan M. Cairns, Christiana Spyrou, Rory Stark, Mike L. Smith, Andy G. Lynch, Simon Tavaré:
BayesPeak - an R package for analysing ChIP-seq data. 713-714 - Lakshmi Kuttippurathu, Michael Hsing, Yongchao Liu, Bertil Schmidt, Douglas L. Maskell, Kyungjoon Lee, Aibin He, William T. Pu, Sek Won Kong:
CompleteMOTIFs: DNA motif discovery platform for transcription factor binding experiments. 715-717
- Heng Li:
Tabix: fast retrieval of sequence features from generic TAB-delimited files. 718-719 - Troy B. Hawkins, Jessica Dantzer, Brandon Peters, Mary Dinauer, Keithanne Mockaitis, Sean D. Mooney, Kenneth Cornetta:
Identifying viral integration sites using SeqMap 2.0. 720-722
- Kliment Olechnovic, Mindaugas Margelevicius, Ceslovas Venclovas:
Voroprot: an interactive tool for the analysis and visualization of complex geometric features of protein structure. 723-724
- Daniel Baron, Audrey Bihouée, Raluca Teusan, Emeric Dubois, Frédérique Savagner, Marja Steenman, Rémi Houlgatte, Gérard Ramstein:
MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets. 725-726
- Bevan Emma Huang, Andrew W. George:
R/mpMap: a computational platform for the genetic analysis of multiparent recombinant inbred lines. 727-729
- Monica Chagoyen, Florencio Pazos:
MBRole: enrichment analysis of metabolomic data. 730-731 - Francois Ribalet, David M. Schruth, E. Virginia Armbrust:
flowPhyto: enabling automated analysis of microscopic algae from continuous flow cytometric data. 732-733 - Chuan Hock Koh, Masao Nagasaki, Ayumu Saito, Chen Li, Limsoon Wong, Satoru Miyano:
MIRACH: efficient model checker for quantitative biological pathway models. 734-735
- Guoqiang Yu, Huai Li, Sook Shin Ha, Ie-Ming Shih, Robert Clarke, Eric P. Hoffman, Subha Madhavan, Jianhua Xuan, Yue Joseph Wang:
PUGSVM: a caBIGTM analytical tool for multiclass gene selection and predictive classification. 736-738 - Ming Li, Shuo Chen, Joan Zhang, Heidi Chen, Yu Shyr:
Wave-spec: a preprocessing package for mass spectrometry data. 739-740
- Mark R. Southern, Patrick R. Griffin:
A Java API for working with PubChem datasets. 741-742 - Tommy Yu, Catherine M. Lloyd, David P. Nickerson, Mike T. Cooling, Andrew K. Miller, Alan Garny, Jonna R. Terkildsen, James R. Lawson, Randall Britten, Peter J. Hunter, Poul M. F. Nielsen:
The Physiome Model Repository 2. 743-744
Volume 27, Number 6, March 2011
- Wai-Ki Yip, Christoph Lange:
Quantitative trait prediction based on genetic marker-array data, a simulation study. 745-748
- Jan Fostier, Sebastian Proost, Bart Dhoedt, Yvan Saeys, Piet Demeester, Yves Van de Peer, Klaas Vandepoele:
A greedy, graph-based algorithm for the alignment of multiple homologous gene lists. 749-756 - Oliver Keller, Martin Kollmar, Mario Stanke, Stephan Waack:
A novel hybrid gene prediction method employing protein multiple sequence alignments. 757-763
- Guillaume Marçais, Carl Kingsford:
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers. 764-770 - Yi Zhang, Xianhui Wang, Le Kang:
A k-mer scheme to predict piRNAs and characterize locust piRNAs. 771-776 - Yejun Wang, Qing Zhang, Ming-an Sun, Dianjing Guo:
High-accuracy prediction of bacterial type III secreted effectors based on position-specific amino acid composition profiles. 777-784
- Yang Cao, Lin Song, Zhichao Miao, Yun Hu, Liqing Tian, Taijiao Jiang:
Improved side-chain modeling by coupling clash-detection guided iterative search with rotamer relaxation. 785-790 - Guy Tsafnat, Jaron Schaeffer, Andrew Clayphan, Jonathan R. Iredell, Sally R. Partridge, Enrico W. Coiera:
Computational inference of grammars for larger-than-gene structures from annotated gene sequences. 791-796
- Clement Chung, Jian Liu, Andrew Emili, Brendan J. Frey:
Computational refinement of post-translational modifications predicted from tandem mass spectrometry. 797-806 - Alexandra Posekany, K. Felsenstein, Peter Sykacek:
Biological assessment of robust noise models in microarray data analysis. 807-814
- Vanda M. Lourenço, Ana M. Pires, M. Kirst:
Robust linear regression methods in association studies. 815-821 - Rick Twee-Hee Ong, Xuanyao Liu, Wan-Ting Poh, Xueling Sim, Kee Seng Chia, Yik-Ying Teo:
A method for identifying haplotypes carrying the causative allele in positive natural selection and genome-wide association studies. 822-828 - Christian Rödelsperger, Peter M. Krawitz, Sebastian Bauer, Jochen Hecht, Abigail W. Bigham, Michael Bamshad, Birgit Jonske de Condor, Michal R. Schweiger, Peter N. Robinson:
Identity-by-descent filtering of exome sequence data for disease-gene identification in autosomal recessive disorders. 829-836