qcumber
quality control of genomic sequences
Install
- All systems
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curl cmd.cat/qcumber.sh
- Debian
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apt-get install qcumber - Ubuntu
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apt-get install qcumber - Kali Linux
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apt-get install qcumber - Windows (WSL2)
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sudo apt-get updatesudo apt-get install qcumber
qcumber
quality control of genomic sequences
QCPipeline is a tool for quality control. The workflow is as follows: 1. Quality control with FastQC 2. Trim Reads with Trimmomatic 3. Quality control of trimmed reads with FastQC 4. Map reads against reference using bowtie2 5. Classify reads with Kraken