lagan.pl

highly parametrizable pairwise global genome sequence aligner

Install

All systems
curl cmd.cat/lagan.pl.sh
Debian Debian
apt-get install lagan
Ubuntu
apt-get install lagan
image/svg+xml Kali Linux
apt-get install lagan
Fedora
dnf install lagan
Windows (WSL2)
sudo apt-get update sudo apt-get install lagan

lagan

highly parametrizable pairwise global genome sequence aligner

Lagan takes local alignments generated by CHAOS as anchors, and limits the search area of the Needleman-Wunsch algorithm around these anchors. Multi-LAGAN is a generalization of the pairwise algorithm to multiple sequence alignment. M-LAGAN performs progressive pairwise alignments, guided by a user-specified phylogenetic tree. Alignments are aligned to other alignments using the sum-of-pairs metric.