Jelly.py

genome assembly upgrading tool

Install

All systems
curl cmd.cat/Jelly.py.sh
Debian Debian
apt-get install pbjelly
Ubuntu
apt-get install pbjelly
Windows (WSL2)
sudo apt-get update sudo apt-get install pbjelly
Raspbian
apt-get install pbjelly

pbjelly

genome assembly upgrading tool

PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes. PBJelly is part of the PBSuite.