{"id":"https:\/\/openalex.org\/W4307844970","doi":"https:\/\/doi.org\/10.1093\/nar\/gkac928","title":"TmAlphaFold database: membrane localization and evaluation of AlphaFold2 predicted alpha-helical transmembrane protein structures","display_name":"TmAlphaFold database: membrane localization and evaluation of AlphaFold2 predicted alpha-helical transmembrane protein structures","publication_year":2022,"publication_date":"2022-11-01","ids":{"openalex":"https:\/\/openalex.org\/W4307844970","doi":"https:\/\/doi.org\/10.1093\/nar\/gkac928","pmid":"https:\/\/pubmed.ncbi.nlm.nih.gov\/36318239"},"language":"en","primary_location":{"id":"doi:10.1093\/nar\/gkac928","is_oa":true,"landing_page_url":"https:\/\/doi.org\/10.1093\/nar\/gkac928","pdf_url":"https:\/\/academic.oup.com\/nar\/article-pdf\/51\/D1\/D517\/48441515\/gkac928.pdf","source":{"id":"https:\/\/openalex.org\/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https:\/\/openalex.org\/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https:\/\/openalex.org\/P4310311648","https:\/\/openalex.org\/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https:\/\/openalex.org\/licenses\/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https:\/\/academic.oup.com\/nar\/article-pdf\/51\/D1\/D517\/48441515\/gkac928.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https:\/\/openalex.org\/A5088152168","display_name":"L\u00e1szl\u00f3 Dobson","orcid":"https:\/\/orcid.org\/0000-0003-2765-3872"},"institutions":[{"id":"https:\/\/openalex.org\/I4210151515","display_name":"Institute of Molecular Life Sciences","ror":"https:\/\/ror.org\/04t4pws42","country_code":"HU","type":"facility","lineage":["https:\/\/openalex.org\/I4210151515","https:\/\/openalex.org\/I4387152226","https:\/\/openalex.org\/I80251312"]},{"id":"https:\/\/openalex.org\/I4210153543","display_name":"European Molecular Biology Laboratory","ror":"https:\/\/ror.org\/050589e39","country_code":"DE","type":"government","lineage":["https:\/\/openalex.org\/I4210138560","https:\/\/openalex.org\/I4210153543"]},{"id":"https:\/\/openalex.org\/I80251312","display_name":"HUN-REN Research Centre for Natural Sciences","ror":"https:\/\/ror.org\/03zwxja46","country_code":"HU","type":"facility","lineage":["https:\/\/openalex.org\/I4387152226","https:\/\/openalex.org\/I80251312"]}],"countries":["DE","HU"],"is_corresponding":false,"raw_author_name":"Laszlo Dobson","raw_affiliation_strings":["Protein Bioinformatics Research Group, Institute of Enzymology, Research Centre for Natural Sciences , Magyar Tud\u00f3sok k\u00f6r\u00fatja 2, H-1117\u00a0 Budapest ,\u00a0 Hungary","Structural and Computational Biology Unit, European Molecular Biology Laboratory , Meyerhofstra\u00dfe 1, 69117\u00a0 Heidelberg ,\u00a0 Germany"],"affiliations":[{"raw_affiliation_string":"Protein Bioinformatics Research Group, Institute of Enzymology, Research Centre for Natural Sciences , Magyar Tud\u00f3sok k\u00f6r\u00fatja 2, H-1117\u00a0 Budapest ,\u00a0 Hungary","institution_ids":["https:\/\/openalex.org\/I80251312","https:\/\/openalex.org\/I4210151515"]},{"raw_affiliation_string":"Structural and Computational Biology Unit, European Molecular Biology Laboratory , Meyerhofstra\u00dfe 1, 69117\u00a0 Heidelberg ,\u00a0 Germany","institution_ids":["https:\/\/openalex.org\/I4210153543"]}]},{"author_position":"middle","author":{"id":"https:\/\/openalex.org\/A5039820001","display_name":"Levente Istv\u00e1n Szekeres","orcid":null},"institutions":[{"id":"https:\/\/openalex.org\/I4210151515","display_name":"Institute of Molecular Life Sciences","ror":"https:\/\/ror.org\/04t4pws42","country_code":"HU","type":"facility","lineage":["https:\/\/openalex.org\/I4210151515","https:\/\/openalex.org\/I4387152226","https:\/\/openalex.org\/I80251312"]},{"id":"https:\/\/openalex.org\/I80251312","display_name":"HUN-REN Research Centre for Natural Sciences","ror":"https:\/\/ror.org\/03zwxja46","country_code":"HU","type":"facility","lineage":["https:\/\/openalex.org\/I4387152226","https:\/\/openalex.org\/I80251312"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Levente I Szekeres","raw_affiliation_strings":["Protein Bioinformatics Research Group, Institute of Enzymology, Research Centre for Natural Sciences , Magyar Tud\u00f3sok k\u00f6r\u00fatja 2, H-1117\u00a0 Budapest ,\u00a0 Hungary"],"affiliations":[{"raw_affiliation_string":"Protein Bioinformatics Research Group, Institute of Enzymology, Research Centre for Natural Sciences , Magyar Tud\u00f3sok k\u00f6r\u00fatja 2, H-1117\u00a0 Budapest ,\u00a0 Hungary","institution_ids":["https:\/\/openalex.org\/I80251312","https:\/\/openalex.org\/I4210151515"]}]},{"author_position":"middle","author":{"id":"https:\/\/openalex.org\/A5052374027","display_name":"Csongor Gerd\u00e1n","orcid":"https:\/\/orcid.org\/0000-0003-1726-0813"},"institutions":[{"id":"https:\/\/openalex.org\/I4210151515","display_name":"Institute of Molecular Life Sciences","ror":"https:\/\/ror.org\/04t4pws42","country_code":"HU","type":"facility","lineage":["https:\/\/openalex.org\/I4210151515","https:\/\/openalex.org\/I4387152226","https:\/\/openalex.org\/I80251312"]},{"id":"https:\/\/openalex.org\/I80251312","display_name":"HUN-REN Research Centre for Natural Sciences","ror":"https:\/\/ror.org\/03zwxja46","country_code":"HU","type":"facility","lineage":["https:\/\/openalex.org\/I4387152226","https:\/\/openalex.org\/I80251312"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Csongor Gerd\u00e1n","raw_affiliation_strings":["Protein Bioinformatics Research Group, Institute of Enzymology, Research Centre for Natural Sciences , Magyar Tud\u00f3sok k\u00f6r\u00fatja 2, H-1117\u00a0 Budapest ,\u00a0 Hungary"],"affiliations":[{"raw_affiliation_string":"Protein Bioinformatics Research Group, Institute of Enzymology, Research Centre for Natural Sciences , Magyar Tud\u00f3sok k\u00f6r\u00fatja 2, H-1117\u00a0 Budapest ,\u00a0 Hungary","institution_ids":["https:\/\/openalex.org\/I80251312","https:\/\/openalex.org\/I4210151515"]}]},{"author_position":"middle","author":{"id":"https:\/\/openalex.org\/A5042239913","display_name":"Tam\u00e1s Lang\u00f3","orcid":"https:\/\/orcid.org\/0009-0008-6948-3721"},"institutions":[{"id":"https:\/\/openalex.org\/I4210151515","display_name":"Institute of Molecular Life Sciences","ror":"https:\/\/ror.org\/04t4pws42","country_code":"HU","type":"facility","lineage":["https:\/\/openalex.org\/I4210151515","https:\/\/openalex.org\/I4387152226","https:\/\/openalex.org\/I80251312"]},{"id":"https:\/\/openalex.org\/I80251312","display_name":"HUN-REN Research Centre for Natural Sciences","ror":"https:\/\/ror.org\/03zwxja46","country_code":"HU","type":"facility","lineage":["https:\/\/openalex.org\/I4387152226","https:\/\/openalex.org\/I80251312"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Tam\u00e1s Lang\u00f3","raw_affiliation_strings":["Protein Bioinformatics Research Group, Institute of Enzymology, Research Centre for Natural Sciences , Magyar Tud\u00f3sok k\u00f6r\u00fatja 2, H-1117\u00a0 Budapest ,\u00a0 Hungary"],"affiliations":[{"raw_affiliation_string":"Protein Bioinformatics Research Group, Institute of Enzymology, Research Centre for Natural Sciences , Magyar Tud\u00f3sok k\u00f6r\u00fatja 2, H-1117\u00a0 Budapest ,\u00a0 Hungary","institution_ids":["https:\/\/openalex.org\/I80251312","https:\/\/openalex.org\/I4210151515"]}]},{"author_position":"middle","author":{"id":"https:\/\/openalex.org\/A5081208395","display_name":"Andr\u00e1s Zeke","orcid":"https:\/\/orcid.org\/0000-0002-5229-8617"},"institutions":[{"id":"https:\/\/openalex.org\/I4210151515","display_name":"Institute of Molecular Life Sciences","ror":"https:\/\/ror.org\/04t4pws42","country_code":"HU","type":"facility","lineage":["https:\/\/openalex.org\/I4210151515","https:\/\/openalex.org\/I4387152226","https:\/\/openalex.org\/I80251312"]},{"id":"https:\/\/openalex.org\/I80251312","display_name":"HUN-REN Research Centre for Natural Sciences","ror":"https:\/\/ror.org\/03zwxja46","country_code":"HU","type":"facility","lineage":["https:\/\/openalex.org\/I4387152226","https:\/\/openalex.org\/I80251312"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Andr\u00e1s Zeke","raw_affiliation_strings":["Protein Bioinformatics Research Group, Institute of Enzymology, Research Centre for Natural Sciences , Magyar Tud\u00f3sok k\u00f6r\u00fatja 2, H-1117\u00a0 Budapest ,\u00a0 Hungary"],"affiliations":[{"raw_affiliation_string":"Protein Bioinformatics Research Group, Institute of Enzymology, Research Centre for Natural Sciences , Magyar Tud\u00f3sok k\u00f6r\u00fatja 2, H-1117\u00a0 Budapest ,\u00a0 Hungary","institution_ids":["https:\/\/openalex.org\/I80251312","https:\/\/openalex.org\/I4210151515"]}]},{"author_position":"last","author":{"id":"https:\/\/openalex.org\/A5025649527","display_name":"G\u00e1bor Tusn\u00e1dy","orcid":"https:\/\/orcid.org\/0000-0001-8105-0285"},"institutions":[{"id":"https:\/\/openalex.org\/I4210151515","display_name":"Institute of Molecular Life Sciences","ror":"https:\/\/ror.org\/04t4pws42","country_code":"HU","type":"facility","lineage":["https:\/\/openalex.org\/I4210151515","https:\/\/openalex.org\/I4387152226","https:\/\/openalex.org\/I80251312"]},{"id":"https:\/\/openalex.org\/I80251312","display_name":"HUN-REN Research Centre for Natural Sciences","ror":"https:\/\/ror.org\/03zwxja46","country_code":"HU","type":"facility","lineage":["https:\/\/openalex.org\/I4387152226","https:\/\/openalex.org\/I80251312"]}],"countries":["HU"],"is_corresponding":true,"raw_author_name":"G\u00e1bor E Tusn\u00e1dy","raw_affiliation_strings":["Protein Bioinformatics Research Group, Institute of Enzymology, Research Centre for Natural Sciences , Magyar Tud\u00f3sok k\u00f6r\u00fatja 2, H-1117\u00a0 Budapest ,\u00a0 Hungary"],"affiliations":[{"raw_affiliation_string":"Protein Bioinformatics Research Group, Institute of Enzymology, Research Centre for Natural Sciences , Magyar Tud\u00f3sok k\u00f6r\u00fatja 2, H-1117\u00a0 Budapest ,\u00a0 Hungary","institution_ids":["https:\/\/openalex.org\/I80251312","https:\/\/openalex.org\/I4210151515"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https:\/\/openalex.org\/A5025649527"],"corresponding_institution_ids":["https:\/\/openalex.org\/I4210151515","https:\/\/openalex.org\/I80251312"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":6.4228,"has_fulltext":false,"cited_by_count":80,"citation_normalized_percentile":{"value":0.97835599,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"51","issue":"D1","first_page":"D517","last_page":"D522"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https:\/\/openalex.org\/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https:\/\/openalex.org\/subfields\/1312","display_name":"Molecular Biology"},"field":{"id":"https:\/\/openalex.org\/fields\/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https:\/\/openalex.org\/domains\/1","display_name":"Life Sciences"}},"topics":[{"id":"https:\/\/openalex.org\/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https:\/\/openalex.org\/subfields\/1312","display_name":"Molecular Biology"},"field":{"id":"https:\/\/openalex.org\/fields\/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https:\/\/openalex.org\/domains\/1","display_name":"Life Sciences"}},{"id":"https:\/\/openalex.org\/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9991000294685364,"subfield":{"id":"https:\/\/openalex.org\/subfields\/1312","display_name":"Molecular Biology"},"field":{"id":"https:\/\/openalex.org\/fields\/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https:\/\/openalex.org\/domains\/1","display_name":"Life Sciences"}},{"id":"https:\/\/openalex.org\/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9987999796867371,"subfield":{"id":"https:\/\/openalex.org\/subfields\/1312","display_name":"Molecular Biology"},"field":{"id":"https:\/\/openalex.org\/fields\/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https:\/\/openalex.org\/domains\/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https:\/\/openalex.org\/keywords\/transmembrane-protein","display_name":"Transmembrane protein","score":0.7120411396026611},{"id":"https:\/\/openalex.org\/keywords\/biology","display_name":"Biology","score":0.6867722868919373},{"id":"https:\/\/openalex.org\/keywords\/correctness","display_name":"Correctness","score":0.6078482270240784},{"id":"https:\/\/openalex.org\/keywords\/membrane-protein","display_name":"Membrane protein","score":0.5504084229469299},{"id":"https:\/\/openalex.org\/keywords\/database","display_name":"Database","score":0.42666518688201904},{"id":"https:\/\/openalex.org\/keywords\/protein-structure","display_name":"Protein structure","score":0.42551150918006897},{"id":"https:\/\/openalex.org\/keywords\/template","display_name":"Template","score":0.41951650381088257},{"id":"https:\/\/openalex.org\/keywords\/computational-biology","display_name":"Computational biology","score":0.41940760612487793},{"id":"https:\/\/openalex.org\/keywords\/membrane","display_name":"Membrane","score":0.40698811411857605},{"id":"https:\/\/openalex.org\/keywords\/bioinformatics","display_name":"Bioinformatics","score":0.3588946461677551},{"id":"https:\/\/openalex.org\/keywords\/computer-science","display_name":"Computer science","score":0.27504509687423706},{"id":"https:\/\/openalex.org\/keywords\/algorithm","display_name":"Algorithm","score":0.2605412006378174},{"id":"https:\/\/openalex.org\/keywords\/biochemistry","display_name":"Biochemistry","score":0.18244487047195435}],"concepts":[{"id":"https:\/\/openalex.org\/C24530287","wikidata":"https:\/\/www.wikidata.org\/wiki\/Q424204","display_name":"Transmembrane protein","level":3,"score":0.7120411396026611},{"id":"https:\/\/openalex.org\/C86803240","wikidata":"https:\/\/www.wikidata.org\/wiki\/Q420","display_name":"Biology","level":0,"score":0.6867722868919373},{"id":"https:\/\/openalex.org\/C55439883","wikidata":"https:\/\/www.wikidata.org\/wiki\/Q360812","display_name":"Correctness","level":2,"score":0.6078482270240784},{"id":"https:\/\/openalex.org\/C144647389","wikidata":"https:\/\/www.wikidata.org\/wiki\/Q423042","display_name":"Membrane protein","level":3,"score":0.5504084229469299},{"id":"https:\/\/openalex.org\/C77088390","wikidata":"https:\/\/www.wikidata.org\/wiki\/Q8513","display_name":"Database","level":1,"score":0.42666518688201904},{"id":"https:\/\/openalex.org\/C47701112","wikidata":"https:\/\/www.wikidata.org\/wiki\/Q735188","display_name":"Protein structure","level":2,"score":0.42551150918006897},{"id":"https:\/\/openalex.org\/C82714645","wikidata":"https:\/\/www.wikidata.org\/wiki\/Q438331","display_name":"Template","level":2,"score":0.41951650381088257},{"id":"https:\/\/openalex.org\/C70721500","wikidata":"https:\/\/www.wikidata.org\/wiki\/Q177005","display_name":"Computational biology","level":1,"score":0.41940760612487793},{"id":"https:\/\/openalex.org\/C41625074","wikidata":"https:\/\/www.wikidata.org\/wiki\/Q176088","display_name":"Membrane","level":2,"score":0.40698811411857605},{"id":"https:\/\/openalex.org\/C60644358","wikidata":"https:\/\/www.wikidata.org\/wiki\/Q128570","display_name":"Bioinformatics","level":1,"score":0.3588946461677551},{"id":"https:\/\/openalex.org\/C41008148","wikidata":"https:\/\/www.wikidata.org\/wiki\/Q21198","display_name":"Computer science","level":0,"score":0.27504509687423706},{"id":"https:\/\/openalex.org\/C11413529","wikidata":"https:\/\/www.wikidata.org\/wiki\/Q8366","display_name":"Algorithm","level":1,"score":0.2605412006378174},{"id":"https:\/\/openalex.org\/C55493867","wikidata":"https:\/\/www.wikidata.org\/wiki\/Q7094","display_name":"Biochemistry","level":1,"score":0.18244487047195435},{"id":"https:\/\/openalex.org\/C170493617","wikidata":"https:\/\/www.wikidata.org\/wiki\/Q208467","display_name":"Receptor","level":2,"score":0},{"id":"https:\/\/openalex.org\/C199360897","wikidata":"https:\/\/www.wikidata.org\/wiki\/Q9143","display_name":"Programming language","level":1,"score":0}],"mesh":[{"descriptor_ui":"D000072756","descriptor_name":"Protein Conformation, alpha-Helical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072756","descriptor_name":"Protein Conformation, alpha-Helical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072756","descriptor_name":"Protein Conformation, alpha-Helical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093\/nar\/gkac928","is_oa":true,"landing_page_url":"https:\/\/doi.org\/10.1093\/nar\/gkac928","pdf_url":"https:\/\/academic.oup.com\/nar\/article-pdf\/51\/D1\/D517\/48441515\/gkac928.pdf","source":{"id":"https:\/\/openalex.org\/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https:\/\/openalex.org\/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https:\/\/openalex.org\/P4310311648","https:\/\/openalex.org\/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https:\/\/openalex.org\/licenses\/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:36318239","is_oa":false,"landing_page_url":"https:\/\/pubmed.ncbi.nlm.nih.gov\/36318239","pdf_url":null,"source":{"id":"https:\/\/openalex.org\/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https:\/\/openalex.org\/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https:\/\/openalex.org\/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9825488","is_oa":true,"landing_page_url":"https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/9825488","pdf_url":null,"source":{"id":"https:\/\/openalex.org\/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https:\/\/openalex.org\/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https:\/\/openalex.org\/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https:\/\/openalex.org\/licenses\/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093\/nar\/gkac928","is_oa":true,"landing_page_url":"https:\/\/doi.org\/10.1093\/nar\/gkac928","pdf_url":"https:\/\/academic.oup.com\/nar\/article-pdf\/51\/D1\/D517\/48441515\/gkac928.pdf","source":{"id":"https:\/\/openalex.org\/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https:\/\/openalex.org\/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https:\/\/openalex.org\/P4310311648","https:\/\/openalex.org\/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https:\/\/openalex.org\/licenses\/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https:\/\/openalex.org\/G6280459852","display_name":null,"funder_award_id":"K132522","funder_id":"https:\/\/openalex.org\/F4320335908","funder_display_name":"Nemzeti Kutat\u00e1si, Fejleszt\u00e9si \u00e9s Innovaci\u00f3s Alap"}],"funders":[{"id":"https:\/\/openalex.org\/F4320335908","display_name":"Nemzeti Kutat\u00e1si, Fejleszt\u00e9si \u00e9s Innovaci\u00f3s Alap","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https:\/\/content.openalex.org\/works\/W4307844970.pdf","grobid_xml":"https:\/\/content.openalex.org\/works\/W4307844970.grobid-xml"},"referenced_works_count":28,"referenced_works":["https:\/\/openalex.org\/W1786434256","https:\/\/openalex.org\/W1938173378","https:\/\/openalex.org\/W1970957993","https:\/\/openalex.org\/W2009330288","https:\/\/openalex.org\/W2055043387","https:\/\/openalex.org\/W2078481695","https:\/\/openalex.org\/W2105537627","https:\/\/openalex.org\/W2106335202","https:\/\/openalex.org\/W2140831051","https:\/\/openalex.org\/W2141920771","https:\/\/openalex.org\/W2150853746","https:\/\/openalex.org\/W2162274915","https:\/\/openalex.org\/W2168998070","https:\/\/openalex.org\/W2806884808","https:\/\/openalex.org\/W2983243828","https:\/\/openalex.org\/W3136918052","https:\/\/openalex.org\/W3159719254","https:\/\/openalex.org\/W3177828909","https:\/\/openalex.org\/W3191732278","https:\/\/openalex.org\/W3195120055","https:\/\/openalex.org\/W3195375135","https:\/\/openalex.org\/W3211795435","https:\/\/openalex.org\/W4205192056","https:\/\/openalex.org\/W4206950245","https:\/\/openalex.org\/W4223551334","https:\/\/openalex.org\/W4225101028","https:\/\/openalex.org\/W4229373389","https:\/\/openalex.org\/W4290546426"],"related_works":["https:\/\/openalex.org\/W1977121829","https:\/\/openalex.org\/W2097747021","https:\/\/openalex.org\/W2075741622","https:\/\/openalex.org\/W1974240269","https:\/\/openalex.org\/W1550113321","https:\/\/openalex.org\/W1235738081","https:\/\/openalex.org\/W2062258289","https:\/\/openalex.org\/W2044159875","https:\/\/openalex.org\/W2003037477","https:\/\/openalex.org\/W2584256030"],"abstract_inverted_index":{"AI-driven":[0],"protein":[1,123],"structure":[2,20,138],"prediction,":[3],"most":[4],"notably":[5],"AlphaFold2":[6],"(AF2)":[7],"opens":[8],"new":[9,55,88],"frontiers":[10],"for":[11,23,52],"almost":[12],"all":[13],"fields":[14],"of":[15,45,54,62,83,107,121],"structural":[16,64,84],"biology.":[17],"As":[18],"traditional":[19],"prediction":[21],"methods":[22],"transmembrane":[24],"proteins":[25],"were":[26],"both":[27],"complicated":[28],"and":[29,66],"error":[30],"prone,":[31],"AF2":[32,48,70],"is":[33,139,146],"a":[34,80,98],"great":[35],"help":[36],"to":[37,74,102,117,132],"the":[38,41,60,67,104,108,119,122,125,135],"community.":[39],"Complementing":[40],"relatively":[42],"meager":[43],"number":[44],"experimental":[46],"structures,":[47],"provides":[49],"3D":[50,137],"predictions":[51],"thousands":[53],"alpha-helical":[56],"membrane":[57,109],"proteins.":[58],"However,":[59],"lack":[61],"reliable":[63],"templates":[65],"fact":[68],"that":[69],"was":[71],"not":[72],"trained":[73],"handle":[75],"phase":[76],"boundaries":[77],"also":[78,128],"necessitates":[79],"delicate":[81],"assessment":[82],"correctness.":[85],"In":[86,111],"our":[87],"database,":[89],"Transmembrane":[90],"AlphaFold":[91],"database":[92,131,145],"(TmAlphaFold":[93],"database),":[94],"we":[95,113],"apply":[96],"TMDET,":[97],"simple":[99],"geometry-based":[100],"method":[101],"visualize":[103],"likeliest":[105],"position":[106],"plane.":[110],"addition,":[112],"calculate":[114],"several":[115],"parameters":[116],"evaluate":[118],"location":[120],"into":[124],"membrane.":[126],"This":[127],"allows":[129],"TmAlphaFold":[130,144],"show":[133],"whether":[134],"predicted":[136],"realistic":[140],"or":[141],"not.":[142],"The":[143],"available":[147],"at":[148],"https:\/\/tmalphafold.ttk.hu\/.":[149]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":25},{"year":2024,"cited_by_count":24},{"year":2023,"cited_by_count":22},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-22T08:38:42.863108","created_date":"2025-10-10T00:00:00"}