Explore GO data

• Home allows simple quick searches using autocomplete and the new GOlr backend.

• Interactively search and filter the GO data as you type. These pages allow you to use a powerful search syntax (including boolean operators).

  • Annotations: Associations between GO terms and genes or gene products.
  • Ontology: Gene Ontology Term, Synonym, or Definition.
  • Genes and gene products: Genes and gene products associated with GO terms.
• Search templates (a search "wizard") can be used to quickly answer common questions using a fill-in-the-blank approach.
• Visualization creator for GO graph. Freely make your own ontology graph, including label and color changes. Please see the documentation for more details.
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Drill-down browser can be used to explore the ontologies and annotation from the top levels by opening direct descendant terms individually to create a custom view.
• Base statistics can give a high-level view of what kind of data is available in AmiGO.
• PubMed ID search takes you to a page with summary information and all GO annotations using the inputted ID.
  Search
• Medial search returns match counts for the different search personalities and allows users to select which one they wish to continue with.
  Search

Analysis of GO data

• Term enrichment services offers access to term enrichment analysis, finding significant shared GO terms or parents of those GO terms to help discover what input genes may have in common.
• Term matrix for exploring gene product (bioentity) co-annotation information.

Directly query GO data

• GOOSE is the GO Online SQL Environment. Using this, users may query the a GO SQL database directly using SQL, or edit one of the already made templates.
• Gannet is the Solr analog to GOOSE.

Instance information

• Schema details what fields are recognized by AmiGO 2 on the Solr server.
• Load details about which files are being used in this instance of AmiGO 2 and when they were loaded.
• OWLTools information for the bundled version with this instance of AmiGO.
• Xrefs lists the cross-references currently understood by AmiGO.

Pages for non-JavaScript users and spiders

• For users unable to use JavaScript and spiders, the root GO terms can be found here.

  • biological process
  • cellular component
  • molecular function
• Simple search is a limited non-JavaScript search client for primitive access to GOlr data.