HPCmapper

local alignment discovery between long nucleotide sequencing reads

Install

All systems
curl cmd.cat/HPCmapper.sh
Debian Debian
apt-get install daligner
Ubuntu
apt-get install daligner
image/svg+xml Kali Linux
apt-get install daligner
Windows (WSL2)
sudo apt-get update sudo apt-get install daligner
Raspbian
apt-get install daligner

daligner

local alignment discovery between long nucleotide sequencing reads

These tools permit one to find all significant local alignments between reads encoded in a Dazzler database. The assumption is that the reads are from a Pacific Biosciences RS II long read sequencer. That is, the reads are long and noisy, up to 15% on average.